Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00183 ATGCATGCAAAACAGTGGACCCTCTTCACCATATTATTCCTGCTTTTCTCCTTCTCTTTAATCGCCTCTGCCGTCGACCATCAAGGCCAAACTCTCCTATCATGGAAACAATCTCTGAACTTATCGGCCCAAGAGTTGAACAATTGGGATTCAAATGATGAAACTCCTTGTGACTGGTTTGGAATCACCTGCAACTTCAAACGGGAAGTTGTGGAAATGGAATTCAGGTACGTGGAATTGGGGGGTAGAATTCCCACTAATTTTAGCTCATTGTTGACCCTGAACAAGCTCATCTTGGTGGGAACAAACCTCACTGGTTCAATTCCTAAAGAGATTGGCGATCTAAGAGAATTAAATACATTGGACCTGAGTGGCAATGGCTTGACAGGAGAAATCCAAATTGAGATATGTGGTTTGCTCAAGCTCGAAAATGTCGATCTCAGCTCAAATAGACTTGTGGGCTCGATACCAGCTGAAATTGGGAATCTTACGATCCTTAAAGAGCTTGGTCTTCATGATAATCAACTTAGCGGTCAAATTCCCAGAAGCATAGGTAACTTGAAGCAGCTTAAGGTGATCAGAGCTGGTGGGAACAGAGACATGGAAGGCAATATACCTCCAGAAATTGGGAACTGTACCAATTTGGTTTATGTAGGCTTTGCAGAAACCAGAATTTCAGGCTCTCTGCCACCCAGTTTAGGCTTGCTCAAGAAGCTCAAAACACTCGCATTGTACACAACCTTTCTCTCTGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGAGCTCCAACACATGTTCATCTATGAGACATCGCTCGCAGGCTCGATTCCAACCAGTTTCGGGAATCTCCAGAACCTGCAAAATCTGTTTCTATATAGGAACAGATTGATGGGCACGTTGCCAAAGGAGCTTGGAAACTGTCATCAATTATTGAGTATTGACATTTCAATGAATTCTTTGACGGGAAGCCTTCCAACCACATTTGGTAACGTGACTTCGCTACAAGAATTGAACTTGGGAATGAACAATATATCAGGCGAGATCCCAGCCGAGATTGAGAATTGGAGGGAACTTACTCACTTGATGCTTGACAACAACCAAATCATGGGTTTGATACCATCAGAACTAGGGAATTTAAAAAATTTGAGAACGTTATTCTTGTGGCATAACAAGCTCGAGGGAAGTATTCCGTTTTCAATTTCTAGCTGCCAGATGCTTGAAGAGATGGATTTATCAGTCAATAGCTTGACAGGCCACATTCCTGGAGAAATTTTCCAACTCAAGAAGCTTAACAGCCTCATGCTCATCTCCAACAATCTTTCGGGCGTTATACCTCCAGAGATCGGAAATTGTTCATCGCTAAATCGTTTCAGAGTTAACAAGAACATGCTTTTCGGCGCTCTCCCACCCCAGATTGGGAATTTGAAGAATCTGAGTTTCTTAGACCTTGGAGAGAATCGGTTCTCTGGAGTAATACCTGATGAGATTTCTGGGTGCAAGAATCTAACATTCATCGATATACACTCCAATTATATTACTGGAGCTTTACCCTCAGGTCTCAGCCACCTTATTTCCCTTCAAATCATCGACTTCTCGAACAATTTAATTGAAGGGAATCTAAATCCTGGTCTCGGACTGTTGAGCTCGCTCACAAAACTCATTCTGTACAACAATCGATTTTCCGGCCCAATCCCAAGTGAGCTCGGTTCCTGCTTGAAGTTACAATTATTGGACCTGAGTGTTAATCAACTTTCCTGTAATCTTCCGGGAAAGCTGGGAGAAATTCCGGCGCTGGAGATCGCTCTAAACCTAAGTTGGAACCAACTTGAAGGCGAGATACCGAAGGAGTTCGCTTATTTAGACAGACTCGGAATCTTGGATCTCTCACACAACCACCTCAGCGGCGACCTCCAAATCATCGCCGTAATGCAGAATCTTGTGGTACTCAACATCTCCGATAACAATTTCTCAGGCCGAGTTCCGATGACTTCCTTCTTCCGAAAACTCCCTCCTAGCGTTCTCTCCGGTAATCCAGATCTCTGCTTTGGCAGCCAGTTCACCGACGAAAATGGAGGCAAAAACTCAAGGCGTGAATCAGCGTCTCGCATAGCAGTGGTGGTGCTACTGTGCATAGCTTGGACGCTTCTCATGGTGGCGTTTTACATGAGCTTCGGATCGAAAAAAAGGGCCCAAAGACGCTTCTACGACGACCACGACGGCGACGGCGTCGATAGCAACTTGGAGATTGGCAATGAACTCGAATGGGAGATGACGTTCTATCAAAAGCTCGACCTATCAATATCTGACGTCGCAAAGAAACTGACAGCTGGCAACATCCTCGGCCGTGGCCGATCCGGCGTCGTTTACCAGGTCAACATCCAGCCCGGTTTAACAATTGCCGTCAAACGGTTCAAGACATCGGAGAAGTTCGTCGCCGCCGCATTCTCCTCTGAGATCTCAATTCTAGCCAGTATCCGACATAGGAATATCATCCGGTTGCTCGGTTGGGCAGCAAATCGGAAAACGAAATTGCTATTCTACGACTACTGGCCACACGGAAGCCTTGGCGATCTGTTACACGAGCGGTGCTCTAGTGGATATGTAATCAGCTGGAATGCTCGGTTAAAGATCGCCATCGGCGTGGCAGATGGATTGGCTTACTTGCATCACGACTGCGTTCCCGCGATTTCGCATCGTGACGTGAAGGTCCAAAATATACTGTTGAGTGATGAATACGACGCGTGCCTCACAGATTTTGGATTCGCTAGATTCATTGAAGACAATCCGAACAACTCCTCGTCGGCAAATCCACAATTCGTCGGATCTTATGGCTACATTGCACCCGAGTATGGTCGCATGCTAAAAGTAACAGAAAAAAGCGATGTGTATAGCTATGGAATCGTACTTTTAGAGATGATTACCGGAAAAAAGCCTGCTGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAGCATCATCTATACAGCCAGAAAGATCCAATCGAGCTTCTGGACCCAAAGCTTACGATCCATCTCGACGCGGAAGTTCAAGAAATGTATCAAGTCCTCGAAATCGCTCTTCTGTGCGCCTATCATCGCGCCGATGATCGCCCGACAATGAAGGACGTTGCTGCATTATTGAGAGGAATTCGAACCGACTCAACAATGATGACGATCAAGGGCAACAAACGTAGTAATAGGCTGAAGAGATTCGAAATTCAGTCGTATTAG 3243 45.42 MHAKQWTLFTILFLLFSFSLIASAVDHQGQTLLSWKQSLNLSAQELNNWDSNDETPCDWFGITCNFKREVVEMEFRYVELGGRIPTNFSSLLTLNKLILVGTNLTGSIPKEIGDLRELNTLDLSGNGLTGEIQIEICGLLKLENVDLSSNRLVGSIPAEIGNLTILKELGLHDNQLSGQIPRSIGNLKQLKVIRAGGNRDMEGNIPPEIGNCTNLVYVGFAETRISGSLPPSLGLLKKLKTLALYTTFLSGQIPPEIGNCSELQHMFIYETSLAGSIPTSFGNLQNLQNLFLYRNRLMGTLPKELGNCHQLLSIDISMNSLTGSLPTTFGNVTSLQELNLGMNNISGEIPAEIENWRELTHLMLDNNQIMGLIPSELGNLKNLRTLFLWHNKLEGSIPFSISSCQMLEEMDLSVNSLTGHIPGEIFQLKKLNSLMLISNNLSGVIPPEIGNCSSLNRFRVNKNMLFGALPPQIGNLKNLSFLDLGENRFSGVIPDEISGCKNLTFIDIHSNYITGALPSGLSHLISLQIIDFSNNLIEGNLNPGLGLLSSLTKLILYNNRFSGPIPSELGSCLKLQLLDLSVNQLSCNLPGKLGEIPALEIALNLSWNQLEGEIPKEFAYLDRLGILDLSHNHLSGDLQIIAVMQNLVVLNISDNNFSGRVPMTSFFRKLPPSVLSGNPDLCFGSQFTDENGGKNSRRESASRIAVVVLLCIAWTLLMVAFYMSFGSKKRAQRRFYDDHDGDGVDSNLEIGNELEWEMTFYQKLDLSISDVAKKLTAGNILGRGRSGVVYQVNIQPGLTIAVKRFKTSEKFVAAAFSSEISILASIRHRNIIRLLGWAANRKTKLLFYDYWPHGSLGDLLHERCSSGYVISWNARLKIAIGVADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFIEDNPNNSSSANPQFVGSYGYIAPEYGRMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLYSQKDPIELLDPKLTIHLDAEVQEMYQVLEIALLCAYHRADDRPTMKDVAALLRGIRTDSTMMTIKGNKRSNRLKRFEIQSY 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 938258 941945 - CmaCh18G001830.1 Cma18g00183 313521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00183 1080 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cma18g00183 1080 SUPERFAMILY RNI-like 325 667 - -
Cma18g00183 1080 SUPERFAMILY Protein kinase-like (PK-like) 756 1051 IPR011009 -
Cma18g00183 1080 SMART LRR_typ_2 163 187 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 115 139 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 284 308 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 548 572 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 476 500 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 332 356 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 380 404 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 644 677 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 428 452 IPR003591 -
Cma18g00183 1080 Gene3D Phosphorylase Kinase; domain 1 752 850 - -
Cma18g00183 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Cma18g00183 1080 Pfam Protein kinase domain 778 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cma18g00183 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1076 - -
Cma18g00183 1080 SMART serkin_6 775 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Cma18g00183 1080 SUPERFAMILY RNI-like 75 417 - -
Cma18g00183 1080 PANTHER OS01G0170300 PROTEIN 8 1063 - -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 200 446 IPR032675 -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 24 199 IPR032675 -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 447 687 IPR032675 -
Cma18g00183 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1063 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00083 Cma18g00183 CCT
Cma10g00113 Cma18g00183 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00118 Cma-Chr17:586539 Cma18g00183 Cma-Chr18:938258 0 dispersed
Cma10g00113 Cma-Chr10:477560 Cma18g00183 Cma-Chr18:938258 0 wgd
Cma11g00083 Cma-Chr11:405029 Cma18g00183 Cma-Chr18:938258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69269 PF00069 Pkinase 5.00E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00183 - - csv:101205934 1773.83