Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00254 ATGGCGGACCGTGGATCTTATGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATGGTGATACTGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACAGCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGACTGTACCTTCTCATGTTTTATCCTCTCTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTCCTGGCGAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACTCAAATTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTATGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGGCATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGATGTCTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGCCAAACAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTCGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTCGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTCGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTCATGGGGAAGAGCCAAATTCTCATAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCATGGCTTATCCGCAAAGTCATTGAAGGTGGCAAAGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACGTTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCCGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGACGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCGAAGAATCCATCTGCCGCCGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGAATGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACCAAGGCAAGTAGTATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTTCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3273 42.8 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDGDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTAVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQTVPSHVLSSLIEPVSSGIVVGQENSIPGEPSTSNSAITEDFGSSLTMNSNWQVSFEDNTSSFSKEYVDQFPELYSVYGIDSRLTEQKSHNATFGSGHEMSCAHPGIENEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKSTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCHGEEPNSHNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAAFCGRELTVGTLITLNAAPGLPADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAAVLEPPKEDDYDFLAKGRRQNEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASSMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1804145 1820054 - CmaCh19G002540.1 Cma19g00254 314942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00254 1090 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma19g00254 1090 MobiDBLite consensus disorder prediction 200 220 - -
Cma19g00254 1090 Gene3D Immunoglobulins 497 592 IPR013783 -
Cma19g00254 1090 SUPERFAMILY E set domains 504 588 IPR014756 -
Cma19g00254 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1090 - -
Cma19g00254 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1090 - -
Cma19g00254 1090 Gene3D - 913 960 - -
Cma19g00254 1090 MobiDBLite consensus disorder prediction 147 188 - -
Cma19g00254 1090 MobiDBLite consensus disorder prediction 147 220 - -
Cma19g00254 1090 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cma19g00254 1090 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cma19g00254 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 963 IPR027417 -
Cma19g00254 1090 Gene3D - 668 844 IPR036770 -
Cma19g00254 1090 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cma19g00254 1090 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cma19g00254 1090 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma19g00254 1090 SUPERFAMILY Ankyrin repeat 688 798 IPR036770 -
Cma19g00254 1090 SMART iq_5 912 934 IPR000048 GO:0005515
Cma19g00254 1090 SMART iq_5 935 957 IPR000048 GO:0005515
Cma19g00254 1090 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00177 Cma-Chr8:990472 Cma19g00254 Cma-Chr19:1804145 1.38E-46 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma19g00254 Cma-Chr19:1804145 2.91E-45 dispersed
Cma19g00254 Cma-Chr19:1804145 Cma15g00319 Cma-Chr15:1481612 1.53E-06 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma19g00254 Cma-Chr19:1804145 1.38E-61 transposed
Cma16g00713 Cma-Chr16:3713192 Cma19g00254 Cma-Chr19:1804145 7.11E-62 transposed
Cma11g01650 Cma-Chr11:10856550 Cma19g00254 Cma-Chr19:1804145 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36878 PF03859 CG-1 9.00E-51 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00254 K21596 - csv:101203707 1777.68