Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00468 ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACTCCGACGACGACCTCAACAAATTCTGCCCTGAAGACTGCTTCGATCACCCTTCCGATTCCTGCTTCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTATTTCAATCCCGCCGCCCGATTTTGACAATTTCAATCCCTCCTCCGCCGCCAAATCACCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCTCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCAACCCATCACCACCACCACCACAGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTTATCGACGCCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGGCTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCTCTCCCGTCGTAGCTCACTCCGCGCCACCGACACCGACACCACCTCCGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGGCGCCAATTCAGGGGAAAGTTCCATGAGAAACGAAGAACAGGATGAAATCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCCGTGTCTTTAGATTTGCCCTCTGCTCTTCGAATCAGCTCTGTTCTTGCTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTGCTCGGAGAAATCAGAGGGGAGTATGAACAGGAATAGAGGCTTCTTAAATCAAAGTTTCAAAGCGATCCCGGTCTTCAATGAAGCCAGTGTTTCGAACTATTGCTCTCATGGAGCACTGAGGAGTGAATCGCTTGATGAATCAGTGAATTCTGAAGAAACCAATGACTTGAAGAGCAGAATATTTCGGCTCAGACTTCCCAAGCGAAGTGCTATCAACGTTATTCAGAGATGGACGAGTGAGGGCAATCAAGTTACGATCACTGAGCTTCGGAACATCTCCAAAGAACTCAGAAGGCTTCAGCGGTATAAGCACGCTCTTGAGATTTTAGAATGGATGGTGTCTCATAATGAAAACGAGTTATCCGATTCTGACTTTGCAATCCGCATTGACTTGATGACGAAAGTTTTCGGCATCGATGCTGCTGAACGATACTTTGAAGGTCTGCCAATCGACGCCAAAACTTGTGAAACTTATACTTCTCTCCTTCACTCATTTTCGGGATCCAAATTGACTGAAAAGGCAGAAACTCTTTATGAAAAAATGAAGGAGTCAGGTATACCTCTCACTGCCCTTCCATTCAATGAGATGATGACTTTGTACACATCGGTCGGGCAAGTAGAAAAGGTATCCTCGATTGTCAACGACCTGAAACAAAGCAAGGTCCATTCTGACATTTTCACGTATAATCTTTGGATCAGCTCTCTAGCTGCAACTTTAAATATTGATGGCGTTAGACAGATTCTCGATGAGATGACTCGCAACCCCAATTCAAATGAAGTCTGGGTGCGATATATCAATCTCGTCAACATATACATTACATCAGCTCATCTATTGCATTCCGAGTCGAACTCCGTAGTCGAGTCTGAGAGTGGCATTACGCAACGAGAATGGATCACATACGACCTCCTCATTATCTTGTATGCTGGTATGGGAAACAAAGACAAAGTTGATGAGATTTGGAGATCATTAAGGATGACAAAGCAAAAAATGACGAGCAGAAACTACATTTGCATTCTATCTTGTTACCTGATGCTTGATCATTTGAAGGAAATTGGTGAAGTTATTGATCAATGGAAACAATCAAGTACTGGAGATTTTGATGTTTCTGCTTGTAACAGGCTTGTAAATGCGTTTGTTGAAGCTGGCTTCAAGGAGAAAGCCAACAGTTTTGTCACCATTTTGAAGAATTGTGAACCCACAGAAGCATAG 2112 45.69 MDFLSSRKLLSDDSDDDLNKFCPEDCFDHPSDSCFSDCLEKCPTLCSYISISIPPPDFDNFNPSSAAKSPHKLSNLVTLTIALLSFTFLLVLCYAVYARFYSARRRQIRRLDSPPPPTHHHHHHSPVLDHPIWYIRTIGLPPAVIDAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRSPVVAHSAPPTPTPPPAETQMANLQEEEENGANSGESSMRNEEQDEIHLESDNQAMRRSVSLDLPSALRISSVLAVVNEKMDWEGESEQRNGNCSEKSEGSMNRNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANSFVTILKNCEPTEA 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5612484 5619942 + CmaCh19G004680.1 Cma19g00468 315156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00468 703 CDD RING-H2_PA-TM-RING 164 207 - -
Cma19g00468 703 MobiDBLite consensus disorder prediction 246 260 - -
Cma19g00468 703 Pfam Ring finger domain 164 207 IPR001841 -
Cma19g00468 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 214 IPR013083 -
Cma19g00468 703 Gene3D Tetratricopeptide repeat domain 497 579 IPR011990 GO:0005515
Cma19g00468 703 Gene3D Tetratricopeptide repeat domain 359 496 IPR011990 GO:0005515
Cma19g00468 703 MobiDBLite consensus disorder prediction 289 309 - -
Cma19g00468 703 Pfam PPR repeat 527 555 IPR002885 -
Cma19g00468 703 Pfam PPR repeat 458 487 IPR002885 -
Cma19g00468 703 SMART ring_2 165 206 IPR001841 -
Cma19g00468 703 PANTHER OS12G0527900 PROTEIN 326 697 - -
Cma19g00468 703 PANTHER BNAC02G00860D PROTEIN 326 697 - -
Cma19g00468 703 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Cma19g00468 703 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Cma19g00468 703 MobiDBLite consensus disorder prediction 233 260 - -
Cma19g00468 703 Gene3D Tetratricopeptide repeat domain 588 702 IPR011990 GO:0005515
Cma19g00468 703 SUPERFAMILY RING/U-box 159 213 - -
Cma19g00468 703 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01659 Cma19g00468 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00231 Cma-Chr19:1586009 Cma19g00468 Cma-Chr19:5612484 6.54E-38 dispersed
Cma19g00468 Cma-Chr19:5612484 Cma08g00355 Cma-Chr8:2039744 3.56E-58 dispersed
Cma19g00984 Cma-Chr19:8569394 Cma19g00468 Cma-Chr19:5612484 2.71E-42 dispersed
Cma11g01659 Cma-Chr11:10914692 Cma19g00468 Cma-Chr19:5612484 1.45E-113 wgd
Cma19g00468 Cma-Chr19:5612484 Cma02g01617 Cma-Chr2:9189010 1.54E-45 wgd
Cma19g00468 Cma-Chr19:5612484 Cma03g00822 Cma-Chr3:6253749 2.74E-48 wgd
Cma19g00468 Cma-Chr19:5612484 Cma04g00381 Cma-Chr4:1908662 8.11E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00468 - - csv:101204437 682.945