Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00764 ATGCTAAGGGATGTGTATTTCTCTCGCAACAAGGAAGGTAAAGTTCTTCCAATCCCATCAAAACCCCAATCTTATCTCTTTTCCTTCAATCTTCCGATGGATCGCTCACTCCTCCTCGCCACTCTTTTCACTCTTCTTCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGTTAATCAACAAGTGTCGGACCACGATTTGGCCGGGTCTGTTATCAGGCGCCAACACCCCCCAGCTTCCGACCACCGGCTTCGCCCTCCGCAGCGGCAAATCCAAGATCGTTCCGGTCCCGAAATCTTGGTCCGGTCGGTTATGGGCTCGGACCCTTTGTGGATTAGATTCAGATGGGAAGTTCTCTTGCCTCACCGGCGATTGTGGGTCGGGTAAAGTGGAGTGCGATGGCGGCGGCGCTAAACCACCGGCCACCTTGGCGGAGTTTACTCTCAACGGCGCCGATGGGCTTGATTTTTACGACGTCAGCTTGGTCGACGGTTATAATCTTCCGATGCTGGTTGTGGCCAAAGGTGGAACCAGAGGCGGTTGCGCTGCTACCGGCTGTTTGGTGGATTTGAACGGCGCGTGTCCATCGGAGCTTCGAGTAGCGCGTGGTGGTGGTCGTGGTGGAAGTAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGCAGTGAGGCGTTCTCTACGCCTGACACGTGTCGTCCTTCTGTATATTCGGAGTTCTTCAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGCGCATCCGCCGACTACCTTATCATATTTTGTCCACTACCCTACACCAGTCAGAAAGTATTGAGTGCAAGGAAAGACGGGGCAGCGTTACCGCTCGTGAACAAGACCATGATGTACTTGAGAAGCCGAAGATCGATCAGTGTTCGATCGGCAGCCTTCCCTGTAAGTTTCAGGCTTATAGTCTCGAAACGAGGTGTCGAGGGACGGAGAGGGGAGTTCGAGACGGGCGTATCGGCGACGATAGGGGAGACAGCATACTCAAAAAATGGAAGGCTTTTTTGTTTATACACAGTTGAAGTTGATTGA 1104 51.9 MLRDVYFSRNKEGKVLPIPSKPQSYLFSFNLPMDRSLLLATLFTLLLLPDVQSTSFKLINKCRTTIWPGLLSGANTPQLPTTGFALRSGKSKIVPVPKSWSGRLWARTLCGLDSDGKFSCLTGDCGSGKVECDGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTRGGCAATGCLVDLNGACPSELRVARGGGRGGSSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEFFKHACPRSYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSARKDGAALPLVNKTMMYLRSRRSISVRSAAFPVSFRLIVSKRGVEGRRGEFETGVSATIGETAYSKNGRLFCLYTVEVD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3604467 3606270 - CmaCh20G007640.1 Cma20g00764 316578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00764 367 CDD TLP-PA 55 277 - -
Cma20g00764 367 Pfam Thaumatin family 60 278 IPR001938 -
Cma20g00764 367 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 37 289 - -
Cma20g00764 367 SUPERFAMILY Osmotin, thaumatin-like protein 55 278 IPR037176 -
Cma20g00764 367 ProSitePatterns Thaumatin family signature. 116 132 IPR017949 -
Cma20g00764 367 Gene3D Thaumatin 54 278 IPR037176 -
Cma20g00764 367 ProSiteProfiles Thaumatin family profile. 53 278 IPR001938 -
Cma20g00764 367 PANTHER OS03G0233200 PROTEIN 37 289 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 155 171 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 268 277 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 55 67 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 103 114 IPR001938 -
Cma20g00764 367 SMART tha2 56 278 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00680 Cma20g00764 CCT
Cma07g00423 Cma20g00764 CCT
Cma03g00680 Cma20g00764 ECH
Cma07g00423 Cma20g00764 ECH
Cma16g01240 Cma20g00764 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01978 Cma-Chr1:12735370 Cma20g00764 Cma-Chr20:3604467 7.71E-110 dispersed
Cma12g00404 Cma-Chr12:2094081 Cma20g00764 Cma-Chr20:3604467 2.98E-109 dispersed
Cma16g01240 Cma-Chr16:9373372 Cma20g00764 Cma-Chr20:3604467 9.16E-96 dispersed
Cma20g00764 Cma-Chr20:3604467 Cma03g00680 Cma-Chr3:5628886 3.80E-99 dispersed
Cma20g00763 Cma-Chr20:3600503 Cma20g00764 Cma-Chr20:3604467 1.47E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00764 - - csv:101216503 505.753