Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma20g00817 | ATGAAGATCCACTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTCCACCGAGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCTTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTATCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCAAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTTTCACCGTCGCCGGCGACTTCCTCTTCCTCCTCCTCTATCTCCGGCGGCGGCGATGAAAGCGAGGAGGTCACAATTGAAGCTGAAATTGGGATCTTTAAGGCGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTGCAGGCACCGATTGTGGGGAATTTTGGTGGGATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA | 645 | 51.94 | MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3862961 | 3863605 | - | CmaCh20G008170.1 | Cma20g00817 | 316631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma20g00817 | 214 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
| Cma20g00817 | 214 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cma20g00817 | 214 | Gene3D | Classic Zinc Finger | 1 | 111 | - | - | |
| Cma20g00817 | 214 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cma20g00817 | 214 | CDD | Bbox1_BBX-like | 60 | 102 | - | - | |
| Cma20g00817 | 214 | MobiDBLite | consensus disorder prediction | 107 | 128 | - | - | |
| Cma20g00817 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 213 | - | - | |
| Cma20g00817 | 214 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 213 | - | - | |
| Cma20g00817 | 214 | SMART | bboxneu5 | 55 | 102 | IPR000315 | GO:0008270 | |
| Cma20g00817 | 214 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma19g00687 | Cma20g00817 | CCT | |
| Cma19g00687 | Cma20g00817 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g01083 | Cma-Chr11:5944389 | Cma20g00817 | Cma-Chr20:3862961 | 4.42E-65 | dispersed | |
| Cma01g01945 | Cma-Chr1:12606514 | Cma20g00817 | Cma-Chr20:3862961 | 6.52E-45 | wgd | |
| Cma12g00429 | Cma-Chr12:2230092 | Cma20g00817 | Cma-Chr20:3862961 | 1.23E-48 | wgd | |
| Cma19g00687 | Cma-Chr19:7115841 | Cma20g00817 | Cma-Chr20:3862961 | 3.99E-65 | wgd | |
| Cma20g00817 | Cma-Chr20:3862961 | Cma05g00283 | Cma-Chr5:1210628 | 2.24E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37033 | PF00643 | zf-B_box | 4.40E-05 | No_clan | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma20g00817 | - | - | bhj:120089126 | 261.536 |