Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01493 | ATGTTCCATCCTAAGAAAGCTTCCACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCACGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGCATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAACGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATCGAGGCACAAGGGAAGTACATGCAGAGCATACTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGTGGGATCCCAAATAACAATAATAATCAGCAAGATTTTGGCTCCCCTCTTGGCTTCCCATCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCGTGTCTCATAACGATAGCTTACTATGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATGGGTGGGACGCTGGTGGCCGAAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTTGTGTCGGATGATGAAGGCTTGGGAGATCACAAGAAGTATGACGTGAATAATAATAACAACAACAATAATAATAATTCGTCCATAAAGCTTCAGAGGCCGTCGCCCCGAAGGGTTCCCCTTTCCGTGGATAGGGCTAACCACCCTCTTATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA | 1140 | 49.39 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFVSHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGMGGTLVAERDHLEEMYEAKPVVSDDEGLGDHKKYDVNNNNNNNNNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 19617312 | 19620141 | - | MELO3C012590.2.1 | Cme01g01493 | 318469 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01493 | 379 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Cme01g01493 | 379 | MobiDBLite | consensus disorder prediction | 330 | 349 | - | - | |
Cme01g01493 | 379 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 282 | IPR044848 | GO:0003700 | |
Cme01g01493 | 379 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677 | |
Cme01g01493 | 379 | MobiDBLite | consensus disorder prediction | 246 | 266 | - | - | |
Cme01g01493 | 379 | MobiDBLite | consensus disorder prediction | 365 | 379 | - | - | |
Cme01g01493 | 379 | Pfam | MYB-CC type transfactor, LHEQLE motif | 132 | 177 | IPR025756 | - | |
Cme01g01493 | 379 | Pfam | Myb-like DNA-binding domain | 35 | 83 | IPR001005 | - | |
Cme01g01493 | 379 | Gene3D | - | 31 | 89 | - | - | |
Cme01g01493 | 379 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 282 | - | - | |
Cme01g01493 | 379 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cme01g01493 | 379 | MobiDBLite | consensus disorder prediction | 316 | 379 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g01493 | Cme11g01645 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01493 | Cme-Chr1:19617312 | Cme08g01009 | Cme-Chr8:6573492 | 1.41E-50 | dispersed | |
Cme02g00973 | Cme-Chr2:14263757 | Cme01g01493 | Cme-Chr1:19617312 | 1.92E-36 | transposed | |
Cme04g00960 | Cme-Chr4:12941430 | Cme01g01493 | Cme-Chr1:19617312 | 5.47E-39 | transposed | |
Cme04g01468 | Cme-Chr4:20916450 | Cme01g01493 | Cme-Chr1:19617312 | 3.46E-49 | transposed | |
Cme04g01787 | Cme-Chr4:25571642 | Cme01g01493 | Cme-Chr1:19617312 | 2.01E-57 | transposed | |
Cme04g02174 | Cme-Chr4:28969920 | Cme01g01493 | Cme-Chr1:19617312 | 3.94E-48 | transposed | |
Cme08g01857 | Cme-Chr8:22407507 | Cme01g01493 | Cme-Chr1:19617312 | 8.21E-32 | transposed | |
Cme06g00381 | Cme-Chr6:2389842 | Cme01g01493 | Cme-Chr1:19617312 | 1.16E-22 | transposed | |
Cme01g01493 | Cme-Chr1:19617312 | Cme11g01645 | Cme-Chr11:24315395 | 1.62E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40762 | PF00249 | Myb_DNA-binding | 2.10E-06 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01493 | - | - | csv:101217821 | 743.036 |