Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01493 ATGTTCCATCCTAAGAAAGCTTCCACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCACGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGCATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAACGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATCGAGGCACAAGGGAAGTACATGCAGAGCATACTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGTGGGATCCCAAATAACAATAATAATCAGCAAGATTTTGGCTCCCCTCTTGGCTTCCCATCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCGTGTCTCATAACGATAGCTTACTATGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATGGGTGGGACGCTGGTGGCCGAAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTTGTGTCGGATGATGAAGGCTTGGGAGATCACAAGAAGTATGACGTGAATAATAATAACAACAACAATAATAATAATTCGTCCATAAAGCTTCAGAGGCCGTCGCCCCGAAGGGTTCCCCTTTCCGTGGATAGGGCTAACCACCCTCTTATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1140 49.39 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFVSHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGMGGTLVAERDHLEEMYEAKPVVSDDEGLGDHKKYDVNNNNNNNNNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG 379
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 19617312 19620141 - MELO3C012590.2.1 Cme01g01493 318469
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01493 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cme01g01493 379 MobiDBLite consensus disorder prediction 330 349 - -
Cme01g01493 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 282 IPR044848 GO:0003700
Cme01g01493 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Cme01g01493 379 MobiDBLite consensus disorder prediction 246 266 - -
Cme01g01493 379 MobiDBLite consensus disorder prediction 365 379 - -
Cme01g01493 379 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cme01g01493 379 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Cme01g01493 379 Gene3D - 31 89 - -
Cme01g01493 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 282 - -
Cme01g01493 379 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cme01g01493 379 MobiDBLite consensus disorder prediction 316 379 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme01g01493 Cme11g01645 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01493 Cme-Chr1:19617312 Cme08g01009 Cme-Chr8:6573492 1.41E-50 dispersed
Cme02g00973 Cme-Chr2:14263757 Cme01g01493 Cme-Chr1:19617312 1.92E-36 transposed
Cme04g00960 Cme-Chr4:12941430 Cme01g01493 Cme-Chr1:19617312 5.47E-39 transposed
Cme04g01468 Cme-Chr4:20916450 Cme01g01493 Cme-Chr1:19617312 3.46E-49 transposed
Cme04g01787 Cme-Chr4:25571642 Cme01g01493 Cme-Chr1:19617312 2.01E-57 transposed
Cme04g02174 Cme-Chr4:28969920 Cme01g01493 Cme-Chr1:19617312 3.94E-48 transposed
Cme08g01857 Cme-Chr8:22407507 Cme01g01493 Cme-Chr1:19617312 8.21E-32 transposed
Cme06g00381 Cme-Chr6:2389842 Cme01g01493 Cme-Chr1:19617312 1.16E-22 transposed
Cme01g01493 Cme-Chr1:19617312 Cme11g01645 Cme-Chr11:24315395 1.62E-120 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40762 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01493 - - csv:101217821 743.036