Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g00013 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAACGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTGATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTACGATTCTCAACCCGAACTCTGGCCTTCCCCTATTGGCGTCCAACGCGTTCTTTCCCAATTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACGTTTTTGCGACAAAGGATTGCAAAAGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAAAGCCTCACCGCTGCAAAGGGGCTACATGGTCTTAACATGCTTGATTTGAACGATCTTGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAAAGCCTTCTCTTCCACAACCTCAGGCTCAAGCTCAGGCTCAGGCTCCACCGACGACTCAGCCGCAAACTGCAGCGTGGTTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAATAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 672 44.64 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQPQAQAQAQAPPTTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 188002 189174 + MELO3C015239.2.1 Cme02g00013 319902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g00013 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Cme02g00013 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 182 - -
Cme02g00013 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cme02g00013 223 Coils Coil 87 114 - -
Cme02g00013 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme02g00013 223 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cme02g00013 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00013 Cme-Chr2:188002 Cme12g00862 Cme-Chr12:15403219 3.92E-78 dispersed
Cme02g00013 Cme-Chr2:188002 Cme10g00405 Cme-Chr10:2581053 3.08E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40838 PF00319 SRF-TF 5.00E-18 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g00013 - - csv:101203059 409.838