Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01521 ATGGGAATTGACGGTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCCGACTCTGCTTTTCTCTGCCTTCCCTGCGACGCCAAAATTCATTGCGCCAACAAGCTCGCCTCTCGCCACGAGCGTGTCTGGATGTGTGAGGTCTGTGAACAAGCTCCTGCTGTGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACTTGTGATGCCGATATTCACTCTGCTAACCCATTAGCCCGTCGCCACGAGCGTGTCCCTGTCGAGCCTTTTTTCGACTCGACGGAATCAGTTGTTAAATCCTCTTCTGTTTTCAATTTTCTGGTCCCTAATGAAACTAACGCCCCTGTTTGTGATGGTGCCCATCACCACGAGGAAGTAGAGGTTTCCTCCTGGCTTTTATCCAACTCGTTTTTCAACTCTAAGCTCGTCGACGGCCCTGAAATCAAACCCCCTAGCGGTGATCATTTGTTCTTCAACGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCCCTACGCCGGTTACTAACCATACCCACTCCCCGGAAAATTGCTACGACATTGACTTTTGTAGATCCAAGCTCAATTCATTCGGCTATCAGCCTCAATCCCTAAGTCACAGTGTTTCTTCTTCCTCCTTAGAAGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGAAATATCATACCCGATGGGTCAAAACGTGAGTACCGGTGCGGATTCAGGGCTACGGTTGTCAGGACCCGGAAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCCTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTTGCGAAACGAACAGATATGCTATCAGAAGTTGATGAAATCTATGGCTCAGCTGCTTCATCTGTGTTCCTGACAGACGCTCAATACGGCGTTGTACCAACGTTTTGA 1128 49.38 MGIDGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVVKSSSVFNFLVPNETNAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLPTPVTNHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSEISYPMGQNVSTGADSGLRLSGPGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDAQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22279407 22281244 - MELO3C017500.2.1 Cme02g01521 321410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01521 375 CDD Bbox1_BBX-like 22 65 - -
Cme02g01521 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cme02g01521 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 375 IPR045281 GO:0009909
Cme02g01521 375 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cme02g01521 375 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cme02g01521 375 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cme02g01521 375 CDD Bbox1_BBX-like 66 108 - -
Cme02g01521 375 Pfam CCT motif 302 344 IPR010402 GO:0005515
Cme02g01521 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cme02g01521 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 375 - -
Cme02g01521 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01521 Cme-Chr2:22279407 Cme03g01557 Cme-Chr3:24667861 1.29E-104 dispersed
Cme10g00220 Cme-Chr10:1480748 Cme02g01521 Cme-Chr2:22279407 2.06E-06 dispersed
Cme10g00258 Cme-Chr10:1689682 Cme02g01521 Cme-Chr2:22279407 2.06E-07 dispersed
Cme11g00980 Cme-Chr11:13935781 Cme02g01521 Cme-Chr2:22279407 2.13E-08 dispersed
Cme11g01597 Cme-Chr11:23782428 Cme02g01521 Cme-Chr2:22279407 2.07E-09 dispersed
Cme02g01520 Cme-Chr2:22258730 Cme02g01521 Cme-Chr2:22279407 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40909 PF00643 zf-B_box 6.70E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01521 - - csv:101214816 721.465