Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00180 ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTCCTCTCAATTCTCCACCGAAGACCGTCAGTCCTCCGATGCAAATAAAACCACCGCCGCCGCCGTACCTCCCACTACTGCTGACCATTTCATCGTCGAGGACCTTTTGGACTTTTCTAATGACGATGACGTTGTCTTCACCGATGGAGCTTTTGATAACCAAACCCCTACCTCTACCGACTCCTCCTCTCTTACCTTACTCGATTCATGCAATTCTTACCCCAATACCGGCAATGCCCACAACTATCATTTCGCCGACGCTAATTTCTCCACTGACCTTGGTGTTCCGTACGATGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTTTGATTTCCGGGATGAATTCCCAGACTGACGTCCATGACGATGACGCCTCAAAAACTCGAGAATTCCAGAGCGGATTCAACCCCCGAAACCACTCACCCGCTTTTCGCCACGAAATGTCCGTAGTTCCGGCGAAAGCCGCTCGTAGCAAGCGGTCTAGGGCGGCACCTTGCATATGGAATTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTTACGCCACATCCAAACACCGCCAAGAAAACCACGAAGAAGAAAGAAATTCCGGACGACACGTCGTCCGCCGCCGGTAATAACGGGGAAGGACGTAAATGTCTCCATTGTGCCACCGACAAAACGCCCCAGTGGCGAACGGGGCCAATGGGTCCAAAGACGTTGTGTAATGCTTGTGGGGTCCGGTACAAATCCGGTCGTTTGGTACCGGAATACCGACCGGCGGCGAGCCCGACGTTTGTACTGACGAAACACTCAAATTCTCACAGGAAGGTTATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCAAACGACGACGATTATTTGATCCATCAACACATAGGCCCACTCTATCAATAG 1059 50.61 MEGPEYFQPGFSSQFSTEDRQSSDANKTTAAAVPPTTADHFIVEDLLDFSNDDDVVFTDGAFDNQTPTSTDSSSLTLLDSCNSYPNTGNAHNYHFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSQTDVHDDDASKTREFQSGFNPRNHSPAFRHEMSVVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTTKKKEIPDDTSSAAGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 352
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1341476 1343113 - MELO3C003466.2.1 Cme04g00180 324441
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00180 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Cme04g00180 352 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 MobiDBLite consensus disorder prediction 219 243 - -
Cme04g00180 352 MobiDBLite consensus disorder prediction 9 31 - -
Cme04g00180 352 PIRSF Txn_fac_GATA_plant 22 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme04g00180 352 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00180 352 Gene3D - 243 327 IPR013088 GO:0006355|GO:0008270
Cme04g00180 352 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Cme04g00180 352 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Cme04g00180 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 306 - -
Cme04g00180 352 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme03g01757 Cme04g00180 CCT
Cme03g01757 Cme04g00180 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01757 Cme-Chr3:26086792 Cme04g00180 Cme-Chr4:1341476 5.87E-117 dispersed
Cme04g00180 Cme-Chr4:1341476 Cme04g01124 Cme-Chr4:15303307 6.44E-91 dispersed
Cme11g00170 Cme-Chr11:1826644 Cme04g00180 Cme-Chr4:1341476 2.71E-34 dispersed
Cme04g00180 Cme-Chr4:1341476 Cme01g02907 Cme-Chr1:35749345 2.29E-96 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41137 PF00320 GATA 3.20E-15 CL0167 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00180 - - cmo:103503604 682.559