Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g00180 | ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTCCTCTCAATTCTCCACCGAAGACCGTCAGTCCTCCGATGCAAATAAAACCACCGCCGCCGCCGTACCTCCCACTACTGCTGACCATTTCATCGTCGAGGACCTTTTGGACTTTTCTAATGACGATGACGTTGTCTTCACCGATGGAGCTTTTGATAACCAAACCCCTACCTCTACCGACTCCTCCTCTCTTACCTTACTCGATTCATGCAATTCTTACCCCAATACCGGCAATGCCCACAACTATCATTTCGCCGACGCTAATTTCTCCACTGACCTTGGTGTTCCGTACGATGACTTGGCCGAGCTGGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCGACGATTTGGAGAAGCTGAGTTTGATTTCCGGGATGAATTCCCAGACTGACGTCCATGACGATGACGCCTCAAAAACTCGAGAATTCCAGAGCGGATTCAACCCCCGAAACCACTCACCCGCTTTTCGCCACGAAATGTCCGTAGTTCCGGCGAAAGCCGCTCGTAGCAAGCGGTCTAGGGCGGCACCTTGCATATGGAATTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTTACGCCACATCCAAACACCGCCAAGAAAACCACGAAGAAGAAAGAAATTCCGGACGACACGTCGTCCGCCGCCGGTAATAACGGGGAAGGACGTAAATGTCTCCATTGTGCCACCGACAAAACGCCCCAGTGGCGAACGGGGCCAATGGGTCCAAAGACGTTGTGTAATGCTTGTGGGGTCCGGTACAAATCCGGTCGTTTGGTACCGGAATACCGACCGGCGGCGAGCCCGACGTTTGTACTGACGAAACACTCAAATTCTCACAGGAAGGTTATGGAACTCCGGCGACAAAAGGAAATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCAAACGACGACGATTATTTGATCCATCAACACATAGGCCCACTCTATCAATAG | 1059 | 50.61 | MEGPEYFQPGFSSQFSTEDRQSSDANKTTAAAVPPTTADHFIVEDLLDFSNDDDVVFTDGAFDNQTPTSTDSSSLTLLDSCNSYPNTGNAHNYHFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSQTDVHDDDASKTREFQSGFNPRNHSPAFRHEMSVVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTTKKKEIPDDTSSAAGNNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1341476 | 1343113 | - | MELO3C003466.2.1 | Cme04g00180 | 324441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g00180 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 351 | - | - | |
Cme04g00180 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 248 | 273 | IPR000679 | GO:0006355|GO:0043565 | |
Cme04g00180 | 352 | MobiDBLite | consensus disorder prediction | 219 | 243 | - | - | |
Cme04g00180 | 352 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
Cme04g00180 | 352 | PIRSF | Txn_fac_GATA_plant | 22 | 338 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cme04g00180 | 352 | SMART | GATA_3 | 242 | 292 | IPR000679 | GO:0006355|GO:0043565 | |
Cme04g00180 | 352 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cme04g00180 | 352 | Gene3D | - | 243 | 327 | IPR013088 | GO:0006355|GO:0008270 | |
Cme04g00180 | 352 | Pfam | GATA zinc finger | 248 | 281 | IPR000679 | GO:0006355|GO:0043565 | |
Cme04g00180 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 351 | - | - | |
Cme04g00180 | 352 | CDD | ZnF_GATA | 247 | 294 | IPR000679 | GO:0006355|GO:0043565 | |
Cme04g00180 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 243 | 306 | - | - | |
Cme04g00180 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 242 | 278 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme03g01757 | Cme04g00180 | CCT | |
Cme03g01757 | Cme04g00180 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01757 | Cme-Chr3:26086792 | Cme04g00180 | Cme-Chr4:1341476 | 5.87E-117 | dispersed | |
Cme04g00180 | Cme-Chr4:1341476 | Cme04g01124 | Cme-Chr4:15303307 | 6.44E-91 | dispersed | |
Cme11g00170 | Cme-Chr11:1826644 | Cme04g00180 | Cme-Chr4:1341476 | 2.71E-34 | dispersed | |
Cme04g00180 | Cme-Chr4:1341476 | Cme01g02907 | Cme-Chr1:35749345 | 2.29E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41137 | PF00320 | GATA | 3.20E-15 | CL0167 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g00180 | - | - | cmo:103503604 | 682.559 |