Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g00538 ATGCCGTTTCCTACGACCTCAGACCAATACACCATCCTTACTCAGATCGGTGCTAGTCCCAACAGCGCCGTCTACTTGGCCAAATGCGACTCCCAAGACTCATCCACCTCCTCCACTGTCACCGTCGCCATCAAAATCATCGAAACCCCCCAAATCATATTTGACACCAACTTGTTAAACACTTCACTAACGCTCATTGACCACCCCAATATTGTTCGCCCGCATTGTTGTTTCTTCGCCGACGACAACCGTCTTTGGATCGTAATGCCCTACATGTCAGCCGGACCTTTACAATCCGTTCTCTCCCACAGTTTTCCCAGAGGTATGCCCGATCAATTCACCTCCATTCTTCTGTCCCAAGTTCTTCAAGCTTTGGTTTATCTTCACCGAATGGGGTTTGTTCATAAAGCCATTAAACCAAGTAATATCTTCTTTGATTCACAAGGCACTGTTAAGCTATCTGTTTTCGACCTTATGATCTCTGCCGATAATAAAATTGATCGTGATTCTTCAATTCCTTACTGGGTTCCACCCGATGATGAATATAGTTTCAAATCAGATATTTGGGAAGTTGGTGTTTTAGCTATGGAAGTTACTTGGGGTGGTCCTCCAATTATAGACCCAAGAATTCTTGAATCACAAGTTTTGAATATCTCAAGAAGGTTTCCTTACGAATTGAAAACAGAGACGGGTAGAAGAAATAGTGGTGACAGAAGAATATTTGGAGATGCTGTTAAGGAGTTTGTGAAAACTTGCCTGTTAAAAGATCGATTGGAACGGCCGACAGCGGCGAGTTTGTTGGATCATCCATTTGTGGTGAAAGGGGAAAATGCGAATAATTTCTTGTTCAAGAGTATTCCAAAAGGAGTGATTGAAATTGATAGAAGATTTCAACTAGAAAAGGAAAGAATCATTGGGATTATGAATAATGATGAGGGATTGAAGAATCAAAGTGAGAAGATAACGAAGATTAGTGGATGGGTTTATAATGATTTTTTGTTTGAACTTGAACCTGATGGCGAATCATTAGGGAAAAGAGTTCGGTTTGGTGGTGAAACCATAAGAGAATTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGGAGAGAGCAGCACGAAAGTTGATGATACGCCATCTTTACTTGAAATAATAGAGAAAAATTTGATGAGTGGTGGTGATGGTAGTGGTGAATCAAGCAAGAAGAAGAAGAAGAAGAAGAAGATTGTTGATCAAGAAAGTTTAGTGAAAATGTTGACTTCAGTGTTAGGTAATATTGATGCACAAAGGGAGATGGTTTCGATGCTGATAAATCATGTTGGTTATTTGAGTGAAAAACAGTCGGAAATGAGTAATGAAATCAAAAGATTAGAGACAGAATTGAAAGCTGAGAAAGAACAGTACTTTCAACTAGAGTTAGAATATGAATTTCTAAAGCTCAAAGTTCCTGATTCTGACGATGATCAAAAAGAATATCCTTCTTCTTCTTCTTCTTCTGAACAAATAAACACTATGTAA 1512 39.02 MPFPTTSDQYTILTQIGASPNSAVYLAKCDSQDSSTSSTVTVAIKIIETPQIIFDTNLLNTSLTLIDHPNIVRPHCCFFADDNRLWIVMPYMSAGPLQSVLSHSFPRGMPDQFTSILLSQVLQALVYLHRMGFVHKAIKPSNIFFDSQGTVKLSVFDLMISADNKIDRDSSIPYWVPPDDEYSFKSDIWEVGVLAMEVTWGGPPIIDPRILESQVLNISRRFPYELKTETGRRNSGDRRIFGDAVKEFVKTCLLKDRLERPTAASLLDHPFVVKGENANNFLFKSIPKGVIEIDRRFQLEKERIIGIMNNDEGLKNQSEKITKISGWVYNDFLFELEPDGESLGKRVRFGGETIREFEKEEEEEEEGESSTKVDDTPSLLEIIEKNLMSGGDGSGESSKKKKKKKKIVDQESLVKMLTSVLGNIDAQREMVSMLINHVGYLSEKQSEMSNEIKRLETELKAEKEQYFQLELEYEFLKLKVPDSDDDQKEYPSSSSSSEQINTM 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5213001 5214578 + MELO3C026784.2.1 Cme05g00538 327601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g00538 503 Gene3D Transferase(Phosphotransferase) domain 1 6 294 - -
Cme05g00538 503 Coils Coil 445 479 - -
Cme05g00538 503 MobiDBLite consensus disorder prediction 482 503 - -
Cme05g00538 503 ProSiteProfiles Protein kinase domain profile. 10 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00538 503 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 487 - -
Cme05g00538 503 Pfam Protein kinase domain 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme05g00538 503 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 3 487 - -
Cme05g00538 503 MobiDBLite consensus disorder prediction 356 375 - -
Cme05g00538 503 SUPERFAMILY Protein kinase-like (PK-like) 7 278 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme05g00538 Cme06g00521 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00538 Cme-Chr5:5213001 Cme09g00387 Cme-Chr9:3475453 9.35E-49 dispersed
Cme05g00538 Cme-Chr5:5213001 Cme06g00521 Cme-Chr6:3294460 7.71E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64887 PF00069 Pkinase 4.50E-31 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g00538 K08835 - cpep:111806976 451.055