Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme05g01133 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTTGGGAAGGTGCACAATCTTGAAAAACAAGACAGTCATGCCCCCCCTGTTAGTTTGCCAACTGTCTCCGAATCACAACCAGTTAAAGTAGGAAGTGAGGTAGAAGTTCCCAAGGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTGAACTATAAACAATATGATTACTGCTCTGATGATGAGATTAATAGTATTAAGTGTCTAGATCAGAATTCTTCTTCAAGGCCTTCTCTATCAAAGGGAGTCATCCGTGGATGTCCGCAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCAAACCTTGCGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCCAGCATACGGGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGCCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGTAACTCGTGTCCAAAGGATTGATAAACTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGGTTTGCGGTCAGATGAGAAGGAAAAGGAGGAGGTGTAATCGAAAGGGGGTTGATGTTACTAACTTAAATGGAAAAAATGCAGATGCTGGCTCTGTTGAGGCCGAAAGATTTGGATTTGATCCTGGTCCTGATTTTACTTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTCAGCGATACTGCGAAGGGTTGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATCGAGGTTCTCTACGGGGCTGATTTGGAAACCGGAGAGTTCGGTAGTGGTTTTCCAAAGATTAGCTGTCAAGAGGGCTCTACATTAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATCGGAATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCATCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCTGGAAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACACAACTCTCTCCATCCATATTGAAAAGTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACAATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTTTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAACGTGCAAGGAGGAACCTTCCTTGCGGTTCTTCCCAGGCAATAAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGTTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTAAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACAAAATCCCATGGGAATCCTCAATGGAAAGAATTATTGAGGCATTCTTCGTTATTACCAACTCTAACTGCTTTAAACAATGGTCATCATGCCAAAATGTTATCTGATACTACCTCTCTTTTAGAAGTTAAGAGGGAAATTTCCACAGTTAATGGATCTGAGAAGGAAATTGGGCCGCAAAATCATAAAATGGAGGTGAAAAAAGAAAGCCAAGACCTTGTGGCTACCAATTCAAGACATGCAGATTCACAGTCTTGTAAAGAAGATACGAATGCTCTGAATAAGATAGAAGTGAAAAGTACCACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAAAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGATCGGTTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCAGACTCCGGCAACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGTTTGAAAAAAGATTGAATAATTGTCAGTCGGGGACTGTACCTTTAAATAGTAAACAGTCTCCAAACATTAACTTCTCTGTTAGAAATGCAGCTAATGCTATTCAGAACAACACATGTTTAGATTCAGGACTAGGTCATAGTAATAAAGAATTTCTAGCGTCAACAGACACTGATTGTCAAAAACCACAGACATGTGGCTCTGGAAAACTGAATGAAGGTACCCATGGAAATGCCGGAATGAGTTCTACCTCTTGTGTGTTAGACTCTAGTAGAACTACTGCAAATTTATCTTGCAACCAAGCTAATGTGGATAGATTTGTAAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTTGATGTTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTTCTAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGATGAGTATTGGGATTCTCGGCCCTATTCTCGGCCCCAGGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAATGGGATTGATCCTAGGCCAGCTGGAGTTGATGTAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCCATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAAGCGTGTTAGCTCGACTTCTTAATGAAGAGATTCAAAGTCATCGAAGATGA 3705 41.51 MGTELIRVCVEDDSDDFPSVPPGFESYISFSLGKVHNLEKQDSHAPPVSLPTVSESQPVKVGSEVEVPKVAKVTRSLRRKPCVNYKQYDYCSDDEINSIKCLDQNSSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLADAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRVCGQMRRKRRRCNRKGVDVTNLNGKNADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFSKPLSDTAKGCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGILARAFKTRVEMERARRNLPCGSSQAIKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSHGNPQWKELLRHSSLLPTLTALNNGHHAKMLSDTTSLLEVKREISTVNGSEKEIGPQNHKMEVKKESQDLVATNSRHADSQSCKEDTNALNKIEVKSTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYNENAILQTPATDATTMGDKEVNLLFEKRLNNCQSGTVPLNSKQSPNINFSVRNAANAIQNNTCLDSGLGHSNKEFLASTDTDCQKPQTCGSGKLNEGTHGNAGMSSTSCVLDSSRTTANLSCNQANVDRFVRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVKFINVLDPSTLCYYVSEILDVGRDGPLFMVVLEHCSSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCDEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGIDPRPAGVDVVLRGLLKKANLEELSSLHTLLNDNRPTVDQSVLARLLNEEIQSHRR 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18102112 18111185 + MELO3C008714.2.1 Cme05g01133 328196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme05g01133 1234 ProSiteProfiles FYR domain FYRC motif profile. 1059 1149 IPR003889 GO:0005634
Cme05g01133 1234 SMART fyrn_3 1013 1057 IPR003888 GO:0005634
Cme05g01133 1234 ProSiteProfiles JmjN domain profile. 146 187 IPR003349 -
Cme05g01133 1234 ProSiteProfiles FYR domain FYRN motif profile. 999 1057 IPR003888 GO:0005634
Cme05g01133 1234 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Cme05g01133 1234 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Cme05g01133 1234 PANTHER LYSINE-SPECIFIC DEMETHYLASE 771 1231 - -
Cme05g01133 1234 PANTHER LYSINE-SPECIFIC DEMETHYLASE 79 782 - -
Cme05g01133 1234 Pfam F/Y-rich N-terminus 1014 1054 IPR003888 GO:0005634
Cme05g01133 1234 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Cme05g01133 1234 SMART JmjN_1 145 186 IPR003349 -
Cme05g01133 1234 PANTHER JUMONJI 14-RELATED 771 1231 - -
Cme05g01133 1234 PANTHER JUMONJI 14-RELATED 79 782 - -
Cme05g01133 1234 SMART cupin_9 360 526 IPR003347 -
Cme05g01133 1234 Gene3D - 1007 1143 - -
Cme05g01133 1234 SUPERFAMILY Clavaminate synthase-like 361 553 - -
Cme05g01133 1234 Gene3D Cupin 131 510 - -
Cme05g01133 1234 MobiDBLite consensus disorder prediction 753 773 - -
Cme05g01133 1234 Pfam F/Y rich C-terminus 1061 1145 IPR003889 GO:0005634
Cme05g01133 1234 Pfam jmjN domain 147 180 IPR003349 -
Cme05g01133 1234 SMART fyrc_3 1063 1157 IPR003889 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01663 Cme-Chr1:22780904 Cme05g01133 Cme-Chr5:18102112 0 dispersed
Cme05g01133 Cme-Chr5:18102112 Cme12g01007 Cme-Chr12:17605207 4.61E-42 dispersed
Cme05g01133 Cme-Chr5:18102112 Cme06g02447 Cme-Chr6:31516896 1.92E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41355 PF02373 JmjC 6.70E-45 CL0029 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme05g01133 - - csv:101208186 2412.88