Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01014 ATGGGCTCTGCCGATGAGATTGGACTACCGCTCCAATTCGACGTCGAAGACACTATATTCGTTGCTGTGGGCACCGATGTTGACGACGCCAAAGCTACTCTCGTTTGGGCTGTCCAAAACTTCGCCGGCAAAATTTTTTGTCTGCTTCACGTTTATCACCTTCCTCCCAAAAATGAAGAGCCATCTTCCTATACACTAAAAGAACATGTAGGGCAGGCATTTGAGGAACCAGAAAGGCAAAAGCCTTTTGAACTTCTTAATCAATATGTTCTCATACTTGCCAAACTGGGGGTACAAGCCCAGAAAGTATGGATTGAGACGAACAACGTTGAGAGAGGGATTGTTGAAATTATTGCTCAGTACAGTATTAAATGGCTAGTCATGGGCTTAGACACAGAAAGATACAATATGAAGAGGTCTATCGGGTTGAAGTCCAAGAAAGCTTTCTATGTATCCCAGCAAGCACCAATATGGTGTCACATATGGTTTGTCTGCAGAGGGCGCCTTATATACTCAAGGGAGGGCAGAATGGGAAGATCAAAAAGTTCGGAAGTAGGAATCAACTATACCGACCATCTTAAACCAGAGTCTGTAACTTGTAAGAACTTTGCAGATGCTCAAGAAAAGGAGAATGCGGGTGATAGGATAAGCAGGTTTAGATATCAAGGTTTGGTGGATCAGAAACTTTACAATAATGGGGACCTGGGCACTTCAAGGACAACGCTATTGTTAAAGAATGAGGGAGTAAAAGAGGGACATCCAGTTAGCCAGAGTGGTTTGCAAGAAGCCTCGATGAATGGTAAATCCATAAAAGACTTTGAGGGAGTGAAGGCTTGGGTAGAGAAAGATACTGTGGGTGCTGAATTCAAGGCTGAATCATTAGAAAGCTCGTGTATGGAGGAGGTGAAGAAAAGAAAAGAGATGGAAGAACTTTTAGAGAAAGAGAAAAAGGAAGTGGAACGGATGAACAAAGAGCGTGATGGGCTTTTGGAAGAACTACAACATGTCGAAGAACAGAAATCAGTACTTGAGAGAAAAGCTTCAGAGTACCAGTCTGATATGGAGGAGCTGGAGAAGAAGATGTTTGCAGCTGTTGATCTTTTAGTGAGTTTCAAGGAGAAGCGAGATAAATTGCTGATAGAGCGTGAAGGTGCAATGGACAAGCTTCGAAAGCTGAAGAATATTGTTAAAAGGGAACCTTCACGCTATCACAATGCAGAAATGCCTATGTTCTCCTTCGTAGAAATAATTGAAGCAACGAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGCAGTGTTTATAAAGGCCTCCTTCGTCACATGGATGTCGCTCTAAAAATGTTTCCTTCGTATGGTTCTCATTCCCAATCAGCATTTCAATATGAGCAGGTTGAGGTCTTGAGTAGGGTTAGGCATCCCAACCTGGTTTCAATTATTGGAGCATGTCCAGAATCTAGGTTAATAGTGTATGAAAATTTAAAAAATGGAAGTTTGGAAGATCACCTTGCCTGCAAAAATCACAATTGCCCACTTCCATGGCAGACACGGATTCGCATTGCTGCTGATATCTGCTCAGCCCTTATATTTCTTCATTACAGCGACCCTTGCATTGTCCACGGGGATATAAAACCAAGCAAAATCCTACTTGATACCAATTTTATTGCCAAACTAGGTGGTCTGGGCATCTCTCGTTTGATCCCGCAAGAAGAGAAGGCCTTTAATTCGGCCTCAGTATGTAATATATCGAAAGAAAATAATCCATATATAGATCCTGAATATCTTGAGACGGGAAAGTTCACTTCAGAATCAGATGTCTACTCTGTTGGTGTTATTTTGCTGCGAATTTTAACTGGCAGAACACCTCCGGGTATAGTAAAAGATGTAAAATGTGCTATAGAAAATGACAACATTGTTGTCGTTTTAGACTCATCAGCTGGAGACTGGCCACATGATCTAGCAGAGCAATTAGCTCTTGTGGCATTGAGGTGCTGCGAGAAGGAAAAGTTGGATCGGCCTGACCTTGTCTCAGAATTATGGTGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCATCATGTTCGAGTCTGAAGAAACACTCTCGAGTGCCTGCACATTTTACGTGTCCGATTTTTCAGGAAATTATGAAAGATCCACTAATTGCTGCAGATGGATTCACATACGAAGCTGATGCAATAAGAGGATGGTTCCAAAGTGGCCACAACACTTCTCCGATGACAAATCTTAAACTTGAGCACTGTAATCTTGTACCAAATTATGCTCTTCTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGA 2331 42.3 MGSADEIGLPLQFDVEDTIFVAVGTDVDDAKATLVWAVQNFAGKIFCLLHVYHLPPKNEEPSSYTLKEHVGQAFEEPERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIIAQYSIKWLVMGLDTERYNMKRSIGLKSKKAFYVSQQAPIWCHIWFVCRGRLIYSREGRMGRSKSSEVGINYTDHLKPESVTCKNFADAQEKENAGDRISRFRYQGLVDQKLYNNGDLGTSRTTLLLKNEGVKEGHPVSQSGLQEASMNGKSIKDFEGVKAWVEKDTVGAEFKAESLESSCMEEVKKRKEMEELLEKEKKEVERMNKERDGLLEELQHVEEQKSVLERKASEYQSDMEELEKKMFAAVDLLVSFKEKRDKLLIEREGAMDKLRKLKNIVKREPSRYHNAEMPMFSFVEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVALKMFPSYGSHSQSAFQYEQVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLACKNHNCPLPWQTRIRIAADICSALIFLHYSDPCIVHGDIKPSKILLDTNFIAKLGGLGISRLIPQEEKAFNSASVCNISKENNPYIDPEYLETGKFTSESDVYSVGVILLRILTGRTPPGIVKDVKCAIENDNIVVVLDSSAGDWPHDLAEQLALVALRCCEKEKLDRPDLVSELWCVLEPMRSIASASCSSLKKHSRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFQSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7297120 7310751 + MELO3C006923.2.1 Cme06g01014 330163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01014 776 Gene3D HUPs 11 132 IPR014729 -
Cme06g01014 776 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 774 - -
Cme06g01014 776 CDD RING-Ubox_WDSUB1_like 710 751 - -
Cme06g01014 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 776 IPR013083 -
Cme06g01014 776 Gene3D Transferase(Phosphotransferase) domain 1 497 705 - -
Cme06g01014 776 Gene3D Phosphorylase Kinase; domain 1 402 496 - -
Cme06g01014 776 CDD STK_N 18 167 - -
Cme06g01014 776 Pfam Protein tyrosine and serine/threonine kinase 428 678 IPR001245 GO:0004672|GO:0006468
Cme06g01014 776 SUPERFAMILY RING/U-box 704 775 - -
Cme06g01014 776 ProSiteProfiles U-box domain profile. 705 776 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 SUPERFAMILY Protein kinase-like (PK-like) 403 679 IPR011009 -
Cme06g01014 776 Coils Coil 375 395 - -
Cme06g01014 776 SMART Ubox_2 709 772 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 ProSiteProfiles Protein kinase domain profile. 423 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01014 776 Pfam U-box domain 706 774 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 PANTHER OS02G0152300 PROTEIN 13 774 - -
Cme06g01014 776 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
Cme06g01014 776 Coils Coil 291 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g01014 Cme09g01573 CCT
Cme06g01014 Cme09g01573 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01014 Cme-Chr6:7297120 Cme11g02163 Cme-Chr11:29014598 1.19E-158 dispersed
Cme09g01574 Cme-Chr9:20668953 Cme06g01014 Cme-Chr6:7297120 3.47E-14 transposed
Cme06g00175 Cme-Chr6:1068850 Cme06g01014 Cme-Chr6:7297120 9.06E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64950 PF07714 PK_Tyr_Ser-Thr 8.00E-34 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01014 - - csv:101211339 1439.48