Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00278 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACGCTGACTCCGATACTCCGACAAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACCACAATCACCATCACCATCATCACCATCGCCCTCCCTCCTCCTCCTCCTCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCGCCAACTCATGTTATTGAGTATCAACCTCACCATCGTCACCACCCACCACCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCGCCAATCTCTTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACTCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTTGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGATGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGTTACCGCCACCGCCATTGCCACCGTCGCCGCAGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 948 50.11 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSFTNGVLKRHHHHNHHHHHHHRPPSSSSSSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDDDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDVTATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2138970 2140209 + MELO3C000099.2.1 Cme09g00278 337138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00278 315 MobiDBLite consensus disorder prediction 182 206 - -
Cme09g00278 315 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 264 IPR006455 -
Cme09g00278 315 Gene3D - 192 268 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 187 206 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 294 315 - -
Cme09g00278 315 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 21 282 - -
Cme09g00278 315 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Cme09g00278 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Cme09g00278 315 SUPERFAMILY Homeodomain-like 194 268 IPR009057 -
Cme09g00278 315 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Cme09g00278 315 MobiDBLite consensus disorder prediction 139 168 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 1 31 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 36 54 - -
Cme09g00278 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 282 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00278 Cme-Chr9:2138970 Cme10g01673 Cme-Chr10:22954692 5.33E-50 dispersed
Cme10g00417 Cme-Chr10:2641879 Cme09g00278 Cme-Chr9:2138970 2.80E-53 wgd
Cme04g01977 Cme-Chr4:27378003 Cme09g00278 Cme-Chr9:2138970 1.63E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41913 PF04770 ZF-HD_dimer 5.20E-28 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00278 - - cmo:103504491 543.502