Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g00278 | ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACGCTGACTCCGATACTCCGACAAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACCACAATCACCATCACCATCATCACCATCGCCCTCCCTCCTCCTCCTCCTCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCGCCAACTCATGTTATTGAGTATCAACCTCACCATCGTCACCACCCACCACCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCGCCAATCTCTTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACTCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTTGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGATGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGTTACCGCCACCGCCATTGCCACCGTCGCCGCAGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA | 948 | 50.11 | MDLAPAPITTSSNNTKSPDADSDTPTKIPPSFTNGVLKRHHHHNHHHHHHHRPPSSSSSSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDDDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDVTATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2138970 | 2140209 | + | MELO3C000099.2.1 | Cme09g00278 | 337138 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 182 | 206 | - | - | |
Cme09g00278 | 315 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 207 | 264 | IPR006455 | - | |
Cme09g00278 | 315 | Gene3D | - | 192 | 268 | - | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 294 | 315 | - | - | |
Cme09g00278 | 315 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 21 | 282 | - | - | |
Cme09g00278 | 315 | Pfam | ZF-HD protein dimerisation region | 65 | 119 | IPR006456 | - | |
Cme09g00278 | 315 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 67 | 118 | IPR006456 | - | |
Cme09g00278 | 315 | SUPERFAMILY | Homeodomain-like | 194 | 268 | IPR009057 | - | |
Cme09g00278 | 315 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 67 | 118 | IPR006456 | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 139 | 168 | - | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 36 | 54 | - | - | |
Cme09g00278 | 315 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 21 | 282 | - | - | |
Cme09g00278 | 315 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00278 | Cme-Chr9:2138970 | Cme10g01673 | Cme-Chr10:22954692 | 5.33E-50 | dispersed | |
Cme10g00417 | Cme-Chr10:2641879 | Cme09g00278 | Cme-Chr9:2138970 | 2.80E-53 | wgd | |
Cme04g01977 | Cme-Chr4:27378003 | Cme09g00278 | Cme-Chr9:2138970 | 1.63E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41913 | PF04770 | ZF-HD_dimer | 5.20E-28 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g00278 | - | - | cmo:103504491 | 543.502 |