Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01052 | ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCATTTCTAATGGGGTTCTTCAAGAAACTGTAGATGTCACTAAATGTTTGGCGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGCTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCATGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCAACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTAGTTTTTTCTAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGATCTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAATTAGACACAGAGGTATGGACAATAATGTTGCTCTTGATGGTCCTGTTGTGTCGAAAAGTCTGCGACGATGTCAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGCATTCTAACCACCGTACCTGCCCGAAAACCGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATAACTATAACTTGCCGAAGAAGGAAGTAGTTGCCGGAATGGGAGATACTCCACCCGATCTCGCTCGAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGCCAGTTGGATATCCAGAGAGAGGCTATTATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTTATAGCGAGAGAAGGAGCAATTCCAGCTATCATAGAAATCCTGCAGTGTGGAACGGAGGAGGCTAAGGAAAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGACGAAAACAAGGTTCTGATTGGTTCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCAACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGGCCGAGATCGGTAATAACTCTTTCATTGAGATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAGTGTGCTACATCGTTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATACGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA | 1872 | 42.95 | MERQYGSNSLSPCSSISNGVLQETVDVTKCLAEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHAVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLDLRKIADLEAETIAVQKLIRHRGMDNNVALDGPVVSKSLRRCQSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLHSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNNYNLPKKEVVAGMGDTPPDLAREISSLVHNLSSSQLDIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQCGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRAEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 15335584 | 15339374 | + | MELO3C013502.2.1 | Cme11g01052 | 341715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01052 | 623 | Pfam | U-box domain | 249 | 319 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01052 | 623 | Coils | Coil | 146 | 166 | - | - | |
Cme11g01052 | 623 | Gene3D | - | 482 | 621 | IPR011989 | - | |
Cme11g01052 | 623 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 465 | 507 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | Pfam | Armadillo/beta-catenin-like repeat | 413 | 452 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | Pfam | Armadillo/beta-catenin-like repeat | 372 | 411 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | Pfam | Armadillo/beta-catenin-like repeat | 455 | 493 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | ProSiteProfiles | U-box domain profile. | 248 | 322 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01052 | 623 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 28 | 620 | - | - | |
Cme11g01052 | 623 | Gene3D | - | 26 | 139 | IPR036537 | GO:0007166 | |
Cme11g01052 | 623 | SUPERFAMILY | ARM repeat | 343 | 617 | IPR016024 | - | |
Cme11g01052 | 623 | SUPERFAMILY | RING/U-box | 249 | 323 | - | - | |
Cme11g01052 | 623 | SMART | arm_5 | 495 | 535 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | SMART | arm_5 | 578 | 618 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | SMART | arm_5 | 454 | 494 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | SMART | arm_5 | 413 | 453 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | SMART | arm_5 | 536 | 576 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | SMART | arm_5 | 372 | 412 | IPR000225 | GO:0005515 | |
Cme11g01052 | 623 | PANTHER | U BOX DOMAIN-CONTAINING | 28 | 620 | - | - | |
Cme11g01052 | 623 | Gene3D | - | 335 | 479 | IPR011989 | - | |
Cme11g01052 | 623 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 323 | IPR013083 | - | |
Cme11g01052 | 623 | SMART | Ubox_2 | 252 | 315 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01052 | 623 | CDD | RING-Ubox_PUB | 253 | 295 | IPR045210 | - | |
Cme11g01052 | 623 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 383 | 425 | IPR000225 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00333 | Cme-Chr9:2834562 | Cme11g01052 | Cme-Chr11:15335584 | 1.13E-35 | dispersed | |
Cme11g01052 | Cme-Chr11:15335584 | Cme11g01284 | Cme-Chr11:19590109 | 5.55E-156 | dispersed | |
Cme12g00198 | Cme-Chr12:2050619 | Cme11g01052 | Cme-Chr11:15335584 | 1.35E-27 | dispersed | |
Cme02g00465 | Cme-Chr2:4268799 | Cme11g01052 | Cme-Chr11:15335584 | 1.98E-13 | transposed | |
Cme03g01335 | Cme-Chr3:22896656 | Cme11g01052 | Cme-Chr11:15335584 | 2.09E-16 | transposed | |
Cme01g01943 | Cme-Chr1:27812459 | Cme11g01052 | Cme-Chr11:15335584 | 2.13E-22 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01052 | - | - | csv:101214151 | 1162.13 |