Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01052 ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCATTTCTAATGGGGTTCTTCAAGAAACTGTAGATGTCACTAAATGTTTGGCGGAAGCCAATGAATTAATCGAAGCCATTGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGCTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCATGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCAACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTAGTTTTTTCTAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGATCTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAATTAGACACAGAGGTATGGACAATAATGTTGCTCTTGATGGTCCTGTTGTGTCGAAAAGTCTGCGACGATGTCAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGCATTCTAACCACCGTACCTGCCCGAAAACCGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATAACTATAACTTGCCGAAGAAGGAAGTAGTTGCCGGAATGGGAGATACTCCACCCGATCTCGCTCGAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGCCAGTTGGATATCCAGAGAGAGGCTATTATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTTATAGCGAGAGAAGGAGCAATTCCAGCTATCATAGAAATCCTGCAGTGTGGAACGGAGGAGGCTAAGGAAAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGACGAAAACAAGGTTCTGATTGGTTCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCAACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGGCCGAGATCGGTAATAACTCTTTCATTGAGATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAGTGTGCTACATCGTTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATACGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 1872 42.95 MERQYGSNSLSPCSSISNGVLQETVDVTKCLAEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHAVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLDLRKIADLEAETIAVQKLIRHRGMDNNVALDGPVVSKSLRRCQSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLHSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNNYNLPKKEVVAGMGDTPPDLAREISSLVHNLSSSQLDIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQCGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRAEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15335584 15339374 + MELO3C013502.2.1 Cme11g01052 341715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01052 623 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 Coils Coil 146 166 - -
Cme11g01052 623 Gene3D - 482 621 IPR011989 -
Cme11g01052 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 507 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 413 452 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 372 411 IPR000225 GO:0005515
Cme11g01052 623 Pfam Armadillo/beta-catenin-like repeat 455 493 IPR000225 GO:0005515
Cme11g01052 623 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 620 - -
Cme11g01052 623 Gene3D - 26 139 IPR036537 GO:0007166
Cme11g01052 623 SUPERFAMILY ARM repeat 343 617 IPR016024 -
Cme11g01052 623 SUPERFAMILY RING/U-box 249 323 - -
Cme11g01052 623 SMART arm_5 495 535 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 578 618 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 454 494 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 413 453 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 536 576 IPR000225 GO:0005515
Cme11g01052 623 SMART arm_5 372 412 IPR000225 GO:0005515
Cme11g01052 623 PANTHER U BOX DOMAIN-CONTAINING 28 620 - -
Cme11g01052 623 Gene3D - 335 479 IPR011989 -
Cme11g01052 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Cme11g01052 623 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Cme11g01052 623 CDD RING-Ubox_PUB 253 295 IPR045210 -
Cme11g01052 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00333 Cme-Chr9:2834562 Cme11g01052 Cme-Chr11:15335584 1.13E-35 dispersed
Cme11g01052 Cme-Chr11:15335584 Cme11g01284 Cme-Chr11:19590109 5.55E-156 dispersed
Cme12g00198 Cme-Chr12:2050619 Cme11g01052 Cme-Chr11:15335584 1.35E-27 dispersed
Cme02g00465 Cme-Chr2:4268799 Cme11g01052 Cme-Chr11:15335584 1.98E-13 transposed
Cme03g01335 Cme-Chr3:22896656 Cme11g01052 Cme-Chr11:15335584 2.09E-16 transposed
Cme01g01943 Cme-Chr1:27812459 Cme11g01052 Cme-Chr11:15335584 2.13E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01052 - - csv:101214151 1162.13