Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02227 ATGTTGGATTATGAATGGGGATCAACAAACCCGCCGCCGATCATCCTCTCTGGCGAAGAATCCGAACCTGTTTTCAACTCCGACCCATCTCACTCTCACAACTTCCCCACTTTCATAGACCTCCATCATCACAACACATTCTTTACTCCACCGCCGCCACCGCCACCACCGCCGCCGTCCACGGCGGCGTTCAGCTCTCACTTAGGGGGATTCTACGACCACCCACAGAGCTACACTATGGGTACTTCTTCATATCATCATTATAATAGTGTGACTGGGGGTGGAGGGGAGTTTATGTTGGTGCCGAAGAGTGAGGATGTTTGTGGGAGTATGGCGGCGCCGGTGGAATTTGCGGCGAGGATTGGGTTGAATTTGGGGGGAAGGACGTATTTCTCGTCGGAGGAAGAAGAGTTTGTGAACCGGCTGTACAGGAAGACGAGAAGCGGCAGCGAAATGGGTGGTTCGGGGAATTGGGCGGTCCGGTGTCAAGCGGAGGGGTGTAATGCGGATCTGAGTCAAGCGAAGCATTACCACCGACGACATAAGGTTTGTGAGTTTCATTCTAAAGCTTCCACTGTCATCACCGCCGGGTTGACTCAGAGGTTCTGTCAACAGTGCAGCAGGTTTCATGTAGTAGGGGAGTTTGATAATGGAAAACGGAGTTGCCGGAAAAGATTGGCAGATCACAACCGTCGACGGAGAAAGACCCAACAATCTCATCATCAAGGAACCCCTAACTCATCGCAACTGCTCCAAACTACCCCTTCTTCTTCAACTCATTCTGCTGCCACCAGATCGACAATGGAATCAACAGGACAATCGGCATGGTCCGTAACTGTGGCAGTGTCTCCAACAAGAATGTCATTAGACTGTCTTAACCAACGACCATTTTAA 894 51.01 MLDYEWGSTNPPPIILSGEESEPVFNSDPSHSHNFPTFIDLHHHNTFFTPPPPPPPPPPSTAAFSSHLGGFYDHPQSYTMGTSSYHHYNSVTGGGGEFMLVPKSEDVCGSMAAPVEFAARIGLNLGGRTYFSSEEEEFVNRLYRKTRSGSEMGGSGNWAVRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHVVGEFDNGKRSCRKRLADHNRRRRKTQQSHHQGTPNSSQLLQTTPSSSTHSAATRSTMESTGQSAWSVTVAVSPTRMSLDCLNQRPF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29499556 29502640 + MELO3C021144.2.1 Cme11g02227 342890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02227 297 Pfam SBP domain 162 235 IPR004333 GO:0003677
Cme11g02227 297 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Cme11g02227 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 113 294 - -
Cme11g02227 297 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
Cme11g02227 297 MobiDBLite consensus disorder prediction 240 275 - -
Cme11g02227 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 294 IPR044817 GO:0003677
Cme11g02227 297 MobiDBLite consensus disorder prediction 228 275 - -
Cme11g02227 297 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00865 Cme11g02227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00585 Cme-Chr7:5040478 Cme11g02227 Cme-Chr11:29499556 9.89E-35 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01579 Cme-Chr12:23147562 1.54E-33 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01922 Cme-Chr12:25258035 1.63E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42247 PF03110 SBP 1.90E-30 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02227 - - csv:101204773 545.428