Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01746 ATGGGTGTGCTCGTTTTGGTTGTTTCATCTCTTTTACTATCGACCCTTTTCAGCATTTGTACTTTTGCTCTCACCCCAGATGGCTTAACGTTGTTGGAAATTAGAAGTGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCGGATGAGTTTCCCTGTAAATGGCCTGGTATATCTTGTCATCCTGAGGACCATCGGGTTAGCTCAATTAACTTACCTTACATGCAACTTGGAGGGATCATTTCTCCCAGCATTGGTAAACTCAGTAGGTTACAGAGACTTGCACTTCATGAAAATGGCTTACATGGAAATATTCCTAACGAAATCACAAAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTTCAAGGTGGCATACCTTCTGATATCGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATGCGTTAAAGGGTGCTATTCCATCATCCATTGGTCAACTCTCGCTTTTGCGTCATTTGAACTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTCGGAGTTCTAAGCACATTTGGAAGCAATTCGTTCATTGGAAATCTAGATCTCTGTGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGCGATGAAGCTTCTGTTCCTGTGAAAAAGTCTTCACACTACATCAAAGGGGTATTAATTGGTGCAATGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCCTGTGGATACGATGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATATACAGAAGTCAAAAAACAAGTGGTTCACGAACCAAGCACAAAACTTATTACTTTTCATGGTGACCTACCGTACCCATCATCTGAGATTATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCAGGAGGATTTGGTATTGTATACCGGATGGTCATGAATGATTGTGGAACCTTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTCGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGTTACTGTAGTCTTCCATCTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCATGAACATGGACCAGGAAAACAACCTTTGGATTGGAGAGCTCGTCTTAGGATAGCCTTTGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTCTCCAAAGATTGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAACTTGGAGCCCCATGTATCTGACTTTGGACTGGCCAAGCTTTTGGTTGACGACGATGCTCATGTCACAACTGTTGTTGCTGGAACTTTTGGTTATTTGGCTCCAGAATATCTGCAAAGTGGAAGGGCAACTGAAAAATCAGATATTTATAGCTTTGGAGTCTTATTACTGGAGCTGGTGACTGGGAAGAGACCAACGGATCCATCATTTGTAGAGCGAGGCTTAAATGTTGTTGGTTGGATGCACATATTATTGCGAGAAAACAAAATGGATGAGATAGTTGACAAAAGGTGCAAGGACGTTGACGCCGATACTGTAGAAGCAATTCTCGAATTAGCAGCCAAATGCACGGATGCCAACCCGGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTTGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTACGAGTCTCAGTCTGATTATTCTTGA 1806 41.97 MGVLVLVVSSLLLSTLFSICTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDEFPCKWPGISCHPEDHRVSSINLPYMQLGGIISPSIGKLSRLQRLALHENGLHGNIPNEITKCTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNALKGAIPSSIGQLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPVKKSSHYIKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSSEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPSSKLLIYDFLAMGSLDDFLHEHGPGKQPLDWRARLRIAFGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDIYSFGVLLLELVTGKRPTDPSFVERGLNVVGWMHILLRENKMDEIVDKRCKDVDADTVEAILELAAKCTDANPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24175729 24180350 + MELO3C002211.2.1 Cme12g01746 344963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01746 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01746 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
Cme12g01746 601 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 593 - -
Cme12g01746 601 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01746 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cme12g01746 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cme12g01746 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cme12g01746 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cme12g01746 601 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 593 - -
Cme12g01746 601 Gene3D Phosphorylase Kinase; domain 1 269 386 - -
Cme12g01746 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cme12g01746 601 SUPERFAMILY L domain-like 26 206 - -
Cme12g01746 601 SMART serkin_6 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01906 Cme12g01746 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01746 Cme-Chr12:24175729 Cme07g01730 Cme-Chr7:22801598 5.34E-110 dispersed
Cme01g01682 Cme-Chr1:23110862 Cme12g01746 Cme-Chr12:24175729 1.35E-93 transposed
Cme06g02630 Cme-Chr6:33492312 Cme12g01746 Cme-Chr12:24175729 5.27E-68 transposed
Cme07g00433 Cme-Chr7:2860654 Cme12g01746 Cme-Chr12:24175729 4.17E-98 transposed
Cme07g00770 Cme-Chr7:7071782 Cme12g01746 Cme-Chr12:24175729 0 transposed
Cme07g01268 Cme-Chr7:17570277 Cme12g01746 Cme-Chr12:24175729 1.24E-09 transposed
Cme07g01514 Cme-Chr7:20996417 Cme12g01746 Cme-Chr12:24175729 0 transposed
Cme07g01624 Cme-Chr7:22018419 Cme12g01746 Cme-Chr12:24175729 1.87E-51 transposed
Cme07g01988 Cme-Chr7:24985937 Cme12g01746 Cme-Chr12:24175729 6.91E-47 transposed
Cme11g00613 Cme-Chr11:6947134 Cme12g01746 Cme-Chr12:24175729 7.95E-08 transposed
Cme12g01746 Cme-Chr12:24175729 Cme02g01906 Cme-Chr2:25503751 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65346 PF00069 Pkinase 9.50E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01746 - - csv:101219279 1146.72