Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00024 ATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGACGCGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCCTATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGAGATCAAATCAACAATATGTTCTGGAATCTTTCTTCCCTGTCCACGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATAGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAAAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAGATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTGCTAGTTGTGGGAGCAGTGGTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAGAAGCTAAAGCTTGGGAACAAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTGGATACAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGACCAATGTCTCTCCTGAGATAAGTGTGAAGTCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGATGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTTTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACAGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTTGTACACAGAAATATAAAGTCGGCTAATATCGTACTGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTTGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCTAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCAAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCCGAGCCGGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACTGATGAACCTGATGCACATGAGACATCTTAA 2181 43.74 MVKKWSWGEALLLINICILGWRASFIYGATDPGDVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDASINNLGPDIPYQLPQNLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQINNMFWNLSSLSTLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGDSSRSGISGGAIAGILISLLVVGAVVAYLFVKRRPKKSSTDIEKLKLGNKLSVSTASNAAQDSLAEMKLIHTSSSLDTKALDSPASINLRPPPMDSHKSFDDNDTSTIPAAKKTNVSPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANIVLDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83641 88632 - CmoCh01G000240.1 Cmo01g00024 373507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00024 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
Cmo01g00024 726 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cmo01g00024 726 Gene3D Ribonuclease Inhibitor 184 247 IPR032675 -
Cmo01g00024 726 Gene3D Ribonuclease Inhibitor 34 183 IPR032675 -
Cmo01g00024 726 MobiDBLite consensus disorder prediction 374 396 - -
Cmo01g00024 726 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 23 721 - -
Cmo01g00024 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Cmo01g00024 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Cmo01g00024 726 MobiDBLite consensus disorder prediction 704 726 - -
Cmo01g00024 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Cmo01g00024 726 SUPERFAMILY L domain-like 30 236 - -
Cmo01g00024 726 PANTHER OS01G0253100 PROTEIN 23 721 IPR045271 GO:0004714|GO:0006468
Cmo01g00024 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00024 726 SUPERFAMILY Protein kinase-like (PK-like) 401 693 IPR011009 -
Cmo01g00024 726 Gene3D Phosphorylase Kinase; domain 1 385 498 - -
Cmo01g00024 726 MobiDBLite consensus disorder prediction 711 726 - -
Cmo01g00024 726 CDD STKc_IRAK 427 696 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00024 Cmo17g00626 CCT
Cmo01g00024 Cmo08g00808 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00024 Cmo-Chr1:83641 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo13g00445 Cmo-Chr13:5527773 Cmo01g00024 Cmo-Chr1:83641 0 dispersed
Cmo19g01004 Cmo-Chr19:8914284 Cmo01g00024 Cmo-Chr1:83641 7.86E-165 dispersed
Cmo01g00024 Cmo-Chr1:83641 Cmo14g01254 Cmo-Chr14:10564460 0 wgd
Cmo01g00024 Cmo-Chr1:83641 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74002 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00024 - - csv:101208239 1216.45