Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00024 ATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGACGCGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCCTATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGAGATCAAATCAACAATATGTTCTGGAATCTTTCTTCCCTGTCCACGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATAGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAAAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAGATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTGCTAGTTGTGGGAGCAGTGGTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAGAAGCTAAAGCTTGGGAACAAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTGGATACAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGACCAATGTCTCTCCTGAGATAAGTGTGAAGTCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGATGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTTTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACAGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTTGTACACAGAAATATAAAGTCGGCTAATATCGTACTGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTTGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCTAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCAAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCCGAGCCGGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACTGATGAACCTGATGCACATGAGACATCTTAA 2181 43.74 MVKKWSWGEALLLINICILGWRASFIYGATDPGDVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDASINNLGPDIPYQLPQNLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQINNMFWNLSSLSTLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGDSSRSGISGGAIAGILISLLVVGAVVAYLFVKRRPKKSSTDIEKLKLGNKLSVSTASNAAQDSLAEMKLIHTSSSLDTKALDSPASINLRPPPMDSHKSFDDNDTSTIPAAKKTNVSPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANIVLDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83641 88632 - CmoCh01G000240.1 Cmo01g00024 373507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00024 726 Gene3D Transferase(Phosphotransferase) domain 1 500 716 - -
Cmo01g00024 726 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cmo01g00024 726 Gene3D Ribonuclease Inhibitor 184 247 IPR032675 -
Cmo01g00024 726 Gene3D Ribonuclease Inhibitor 34 183 IPR032675 -
Cmo01g00024 726 MobiDBLite consensus disorder prediction 374 396 - -
Cmo01g00024 726 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 23 721 - -
Cmo01g00024 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Cmo01g00024 726 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524
Cmo01g00024 726 MobiDBLite consensus disorder prediction 704 726 - -
Cmo01g00024 726 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515
Cmo01g00024 726 SUPERFAMILY L domain-like 30 236 - -
Cmo01g00024 726 PANTHER OS01G0253100 PROTEIN 23 721 IPR045271 GO:0004714|GO:0006468
Cmo01g00024 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00024 726 SUPERFAMILY Protein kinase-like (PK-like) 401 693 IPR011009 -
Cmo01g00024 726 Gene3D Phosphorylase Kinase; domain 1 385 498 - -
Cmo01g00024 726 MobiDBLite consensus disorder prediction 711 726 - -
Cmo01g00024 726 CDD STKc_IRAK 427 696 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00024 - - - csv:101208239 1216.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00024 Cmo17g00626 CCT
Cmo01g00024 Cmo08g00808 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00024 Cmo-Chr1:83641 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo13g00445 Cmo-Chr13:5527773 Cmo01g00024 Cmo-Chr1:83641 0 dispersed
Cmo19g01004 Cmo-Chr19:8914284 Cmo01g00024 Cmo-Chr1:83641 7.86E-165 dispersed
Cmo01g00024 Cmo-Chr1:83641 Cmo14g01254 Cmo-Chr14:10564460 0 wgd
Cmo01g00024 Cmo-Chr1:83641 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo18g00544 . 384 677 Strubbelig Receptor Gene Family AT1G11130 54.1 7.6e-86 315.8
Cmo13g00445 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.9e-85 313.2
Cmo17g00626 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.1e-83 307.8
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo01g00024 CCT 1 710 Strubbelig Receptor Gene Family AT1G53730 61.6 3.5e-211 732.3
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G53730 60.3 1.5e-201 700.3
Cmo17g00626 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-176 616.7
Cmo08g00808 CCT,CST 33 788 Strubbelig Receptor Gene Family AT1G53730 54.3 1.0e-173 607.8
Cmo01g00024 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 51.3 4.8e-181 632.1
Cmo17g00626 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 52.9 2.6e-155 546.6
Cmo08g00808 CCT,CST 42 786 Strubbelig Receptor Gene Family AT3G14350 50.9 2.7e-152 536.6
Cmo18g00544 . 332 707 Strubbelig Receptor Gene Family AT4G22130 82.2 8.4e-176 614.4
Cmo13g00445 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.9 7.6e-169 591.3
Cmo01g00024 CCT 404 726 Strubbelig Receptor Gene Family AT4G22130 63.4 2.1e-118 423.7
Cmo14g01254 . 389 720 Strubbelig Receptor Gene Family AT4G22130 62.5 1.4e-117 421.0
Cmo17g00626 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 3.0e-117 419.9
Cmo08g00808 CCT,CST 446 790 Strubbelig Receptor Gene Family AT4G22130 60.0 5.0e-112 402.5
Cmo11g01937 CST 393 717 Strubbelig Receptor Gene Family AT4G22130 56.8 1.8e-106 384.0
Cmo19g01004 CST 483 778 Strubbelig Receptor Gene Family AT4G22130 60.6 4.5e-105 379.4
Cmo04g01041 . 416 733 Strubbelig Receptor Gene Family AT4G22130 55.7 6.8e-101 365.5
Cmo03g00498 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.1 9.2e-98 355.1
Cmo15g01506 . 364 677 Strubbelig Receptor Gene Family AT4G22130 56.4 1.7e-96 350.9
Cmo14g00436 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 1.2e-92 338.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74002 PF07714 PK_Tyr_Ser-Thr 1.10E-40 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo01g00024 Cmo_Chr01 FPKM 27.627876 29.410286 7.32986 7.519164 58.848053 64.37056 56.010815 0.418348 0.271061 0.373868