Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo01g00024 | ATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGACGCGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCCTATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGAGATCAAATCAACAATATGTTCTGGAATCTTTCTTCCCTGTCCACGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATAGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAAAACAACAATTTTACTGGTTGGGTTCCTGAACGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAGATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTGCTAGTTGTGGGAGCAGTGGTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAGAAGCTAAAGCTTGGGAACAAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTGGATACAAAAGCATTGGATTCTCCTGCTTCAATCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGACCAATGTCTCTCCTGAGATAAGTGTGAAGTCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGATGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTTTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACAGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTTGTACACAGAAATATAAAGTCGGCTAATATCGTACTGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTTGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTTGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCTAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCAAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCCGAGCCGGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGCGATCACGGATCATCTTTTAGAACTGATGAACCTGATGCACATGAGACATCTTAA | 2181 | 43.74 | MVKKWSWGEALLLINICILGWRASFIYGATDPGDVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDASINNLGPDIPYQLPQNLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQINNMFWNLSSLSTLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPERLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGDSSRSGISGGAIAGILISLLVVGAVVAYLFVKRRPKKSSTDIEKLKLGNKLSVSTASNAAQDSLAEMKLIHTSSSLDTKALDSPASINLRPPPMDSHKSFDDNDTSTIPAAKKTNVSPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPREFLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANIVLDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAHETS | 726 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 83641 | 88632 | - | CmoCh01G000240.1 | Cmo01g00024 | 373507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo01g00024 | 726 | Gene3D | Transferase(Phosphotransferase) domain 1 | 500 | 716 | - | - | |
Cmo01g00024 | 726 | Pfam | Leucine rich repeat N-terminal domain | 33 | 72 | IPR013210 | - | |
Cmo01g00024 | 726 | Gene3D | Ribonuclease Inhibitor | 184 | 247 | IPR032675 | - | |
Cmo01g00024 | 726 | Gene3D | Ribonuclease Inhibitor | 34 | 183 | IPR032675 | - | |
Cmo01g00024 | 726 | MobiDBLite | consensus disorder prediction | 374 | 396 | - | - | |
Cmo01g00024 | 726 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 23 | 721 | - | - | |
Cmo01g00024 | 726 | Pfam | Protein tyrosine and serine/threonine kinase | 423 | 693 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo01g00024 | 726 | ProSitePatterns | Protein kinases ATP-binding region signature. | 427 | 450 | IPR017441 | GO:0005524 | |
Cmo01g00024 | 726 | MobiDBLite | consensus disorder prediction | 704 | 726 | - | - | |
Cmo01g00024 | 726 | Pfam | Leucine rich repeat | 121 | 178 | IPR001611 | GO:0005515 | |
Cmo01g00024 | 726 | SUPERFAMILY | L domain-like | 30 | 236 | - | - | |
Cmo01g00024 | 726 | PANTHER | OS01G0253100 PROTEIN | 23 | 721 | IPR045271 | GO:0004714|GO:0006468 | |
Cmo01g00024 | 726 | ProSiteProfiles | Protein kinase domain profile. | 421 | 696 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo01g00024 | 726 | SUPERFAMILY | Protein kinase-like (PK-like) | 401 | 693 | IPR011009 | - | |
Cmo01g00024 | 726 | Gene3D | Phosphorylase Kinase; domain 1 | 385 | 498 | - | - | |
Cmo01g00024 | 726 | MobiDBLite | consensus disorder prediction | 711 | 726 | - | - | |
Cmo01g00024 | 726 | CDD | STKc_IRAK | 427 | 696 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00024 | Cmo17g00626 | CCT | |
Cmo01g00024 | Cmo08g00808 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00024 | Cmo-Chr1:83641 | Cmo17g00626 | Cmo-Chr17:6571058 | 0 | dispersed | |
Cmo13g00445 | Cmo-Chr13:5527773 | Cmo01g00024 | Cmo-Chr1:83641 | 0 | dispersed | |
Cmo19g01004 | Cmo-Chr19:8914284 | Cmo01g00024 | Cmo-Chr1:83641 | 7.86E-165 | dispersed | |
Cmo01g00024 | Cmo-Chr1:83641 | Cmo14g01254 | Cmo-Chr14:10564460 | 0 | wgd | |
Cmo01g00024 | Cmo-Chr1:83641 | Cmo08g00808 | Cmo-Chr8:5112712 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74002 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-40 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo01g00024 | - | - | csv:101208239 | 1216.45 |