Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00026 ATGAGACCGCTTCAGCCGCCGCAGGGTGTAAATCCGGCCACCGATCGTCCTCGTCGCCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATACGTCTTTGGCTGTTCCCCTCCCTTTGCCTCCGACGTCTTCTAACGCCGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGCCTCAGCCGCAGAAGCATCAGGTTTTCAGCCTCGCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTCTACAAAGTGATTCACCGTCCCACCGCCCGCGTCTATGCTCTGAAGGTCATTTATGGAAACCACGAGGACGCGGTTAGGCTTCAGATGTGCCGTGAGGTTGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTCCTTGAATACATGGATCGAGGCTCCCTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTACATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCCGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGTTTTGGGGTTAGCATATTGGAATTCTACCTCGGACGGTTTCCTCTTGCCGTGGAGAGGCCTGGGGACTGGGCGAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACCGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCACTACTGGAACATGCGTTCATAGCGGGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAAACTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCGTCCTTCCAGCCTTTCTTGA 1110 54.77 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNAAPPPSTSQLHNGNRPPEPQPQKHQVFSLADFERVSRIGSGCGGTVYKVIHRPTARVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFIAGKNGAASQYQNQQTHHQNLRQLLPPPPLRPSSLS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 97615 98724 - CmoCh01G000260.1 Cmo01g00026 373509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00026 369 Pfam Protein kinase domain 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 ProSiteProfiles Protein kinase domain profile. 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 CDD PKc_MAPKK_plant_like 77 336 - -
Cmo01g00026 369 MobiDBLite consensus disorder prediction 50 68 - -
Cmo01g00026 369 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Cmo01g00026 369 Gene3D Phosphorylase Kinase; domain 1 56 158 - -
Cmo01g00026 369 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 357 - -
Cmo01g00026 369 Gene3D Transferase(Phosphotransferase) domain 1 161 359 - -
Cmo01g00026 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cmo01g00026 369 MobiDBLite consensus disorder prediction 1 71 - -
Cmo01g00026 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 357 - -
Cmo01g00026 369 MobiDBLite consensus disorder prediction 344 369 - -
Cmo01g00026 369 SMART serkin_6 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo01g00026 369 SUPERFAMILY Protein kinase-like (PK-like) 77 353 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00026 Cmo-Chr1:97615 Cmo11g00726 Cmo-Chr11:3514026 7.45E-69 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo01g00026 Cmo-Chr1:97615 2.33E-107 transposed
Cmo01g00026 Cmo-Chr1:97615 Cmo12g01353 Cmo-Chr12:11669407 2.69E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74003 PF00069 Pkinase 5.30E-60 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00026 K13413 - csv:101219669 637.491