Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g00058 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAGGAAGAGGCACTTTTGGCTGGCGTACAGAAGCACGGTCCAGGGAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATCTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCCAGGACTCCCAAAGCTAAAGCTATTGTTGCTGCCTCAGTTTCTAACAACCAAAACTCTGCTCTTACTAAGTTTAATGCATCTGCTGATGCTGCAGGAGAAGATCCACCAAACAGCGCCCCACAGGATGGGAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCTCTTTCAACCATAAAAGATTCAAATGGATGCGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCGGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATAGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTATGAAAAATGTTCTCGTGGGGAAATTGTTCTCTTGGCTTAG 837 44.09 MGNQKQKWTQEEEEALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRTPKAKAIVAASVSNNQNSALTKFNASADAAGEDPPNSAPQDGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 205931 209302 - CmoCh01G000580.1 Cmo01g00058 373541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g00058 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cmo01g00058 278 Gene3D - 8 87 - -
Cmo01g00058 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Cmo01g00058 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmo01g00058 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cmo01g00058 278 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmo01g00058 278 SMART sant 4 59 IPR001005 -
Cmo01g00058 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmo01g00058 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Cmo01g00058 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Cmo01g00058 278 Gene3D - 111 198 IPR036388 -
Cmo01g00058 278 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00058 Cmo-Chr1:205931 Cmo16g00332 Cmo-Chr16:1518183 1.19E-35 dispersed
Cmo01g00058 Cmo-Chr1:205931 Cmo14g01287 Cmo-Chr14:10777356 1.60E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
8994 PF00538 Linker_histone 1.10E-10 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g00058 K09422 - csv:101202785 484.182