Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01483 ATGCTCGTTTCTCTCAACTCAGATAAGGAAATGAGTTCATGTTTCGTTAAGTGTTCATCAACTCGGCTGGAGAACATTGATGAAAATGGCCCTGCAAGTTGGTTACCGGGTTCATGTGTTCTACCTGAAACTCCAATTGAGTCCATGGAGTTTCTTGGCAGATCCTGGAGCCTTTCGGCTAAAGAGCTCTCCAAAGCTCTTTCCACTGCCAATGCTTCAAGTCATGTTCAAAATTCAGTGGTTGGGCTTCTTAGTGCTGAAGCACATGATTCAAACTCCACAGTCTTGAGGGAACCACTACGTCCACACTTACCCAGTGGAGATAGTCCTCCTGCTTCCCCAAGAGGAAGTGACGAAATGAAGGATCTAGTATTACTTCACCAAGCATTGAATCCAGAGTTCCTTTCCAATCAGCATCTACTTGGAAATGGGCTATATAAGAGCATATTGAGAGGCAACAAAACATTAGGGAGGTGGATGAAGGATCAAAAAGAGAGGAAGAAGCAGGAAATCAGAACACAGAATGCTCAGTTACATGCAGCTGTATCTGTGGCAGGTGTTGCTGCTTCAGTAGCAGCATTTATTGCAACGCTCGTGCCGCAAGAAACATCATCAGGTAATCAGAAATGGCCATCAAAGACATCAGCAGCAATTGCTTCTGCAGCTGCTTTAGTTGCATCTCATTGCATAGAGATGGCAGAGGAAATGGGAGCTAGCCATGAACACATCTTGAATGTAGTTAACTCTGCCATCAATGCTAGAACTAATGGAGATATCATGACCCTAACAGCAGGAGCAGCTACAGCTCTAAGAGGAGCTGCAACCCTCAGGTCAAGGCTTGAGAAAGGGTTGGGAGGCACAAACTTTGGGGCGGGAGAGGATAAGGTCGAAGAAGAAGGGAAAGAATCAAACATCTTGATAGCTATTAACTTTGTTTCCAGAGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGAGTTCTCCACTGGAAGCAAGTTTCTTTCAGCATAAATTCTGATTGGCAGGTCGTGGCAAAATTGAAAAGCAGGCACATAGCAGGAACATTTACCAAAAACAAAAAGTGTGTGATCTCAGGTGTGAACTGTGATGTTGCAGCATGGCCCGAGCGGGAAACGGAATCGGACGGCGACGAGCAGAGGGCTTACTTTGGTATAGTAACAACAGATAGAACAATAGAGTTTGAATGCAATGGAAAAGGAGAAAAACAGATGTGGATTGAGGGGATACAATATATGATGAACTTTCGTGCCTACATGAAATGA 1281 44.57 MLVSLNSDKEMSSCFVKCSSTRLENIDENGPASWLPGSCVLPETPIESMEFLGRSWSLSAKELSKALSTANASSHVQNSVVGLLSAEAHDSNSTVLREPLRPHLPSGDSPPASPRGSDEMKDLVLLHQALNPEFLSNQHLLGNGLYKSILRGNKTLGRWMKDQKERKKQEIRTQNAQLHAAVSVAGVAASVAAFIATLVPQETSSGNQKWPSKTSAAIASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRSRLEKGLGGTNFGAGEDKVEEEGKESNILIAINFVSRGGELLKRTRKGVLHWKQVSFSINSDWQVVAKLKSRHIAGTFTKNKKCVISGVNCDVAAWPERETESDGDEQRAYFGIVTTDRTIEFECNGKGEKQMWIEGIQYMMNFRAYMK 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11508164 11510687 + CmoCh01G014830.1 Cmo01g01483 374966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01483 426 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 17 424 - -
Cmo01g01483 426 Pfam Auxin canalisation 42 284 IPR008546 -
Cmo01g01483 426 PANTHER EXPRESSED PROTEIN 17 424 IPR040269 -
Cmo01g01483 426 MobiDBLite consensus disorder prediction 92 118 - -
Cmo01g01483 426 Pfam Plant pleckstrin homology-like region 317 420 IPR013666 -
Cmo01g01483 426 ProSiteProfiles PH domain profile. 311 420 IPR001849 -
Cmo01g01483 426 Gene3D - 309 421 IPR011993 -
Cmo01g01483 426 SUPERFAMILY PH domain-like 314 418 - -
Cmo01g01483 426 Coils Coil 161 181 - -
Cmo01g01483 426 SMART PH_update 312 422 IPR001849 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01483 Cmo09g00617 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01483 Cmo-Chr1:11508164 Cmo17g00206 Cmo-Chr17:1206528 1.65E-55 dispersed
Cmo10g00462 Cmo-Chr10:2076512 Cmo01g01483 Cmo-Chr1:11508164 1.37E-16 dispersed
Cmo11g00425 Cmo-Chr11:2096905 Cmo01g01483 Cmo-Chr1:11508164 1.76E-20 dispersed
Cmo01g01483 Cmo-Chr1:11508164 Cmo09g00617 Cmo-Chr9:3084770 2.93E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01483 - - cmax:111480268 769.229