Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g01825 ATGCCAAATAGTTTCTTAGCTTCTCAGCATTATAATGGTGATTTGGTTTCTCCCTTGTCTGTAATGCCACTCAATTCAGATGGATCTCTTTGTTTCATGGAGTCACTCAGCACATTACAACCTCAAGAAATGTTGCCAAATATCTCACCAAAGCTTGAGGACTTTCTTGGTAGTGCAAATCATGGAAGAGAGGCCACAGCTTTGAGCTTAGACAGCATATATTACAATCAAAATGATGGTGCTGAAGCTGTCTCAGAGAGGCAACATTGTTTGAATCTTTTTAAACAACAAGAGCAACATATTCTTTTTGGAATGTTCCAGTTTCCAGCTGAGGATGCCAACAAGGAGTCTCTTATTGCAAGCCATAGCTATGAAATTCGACACGCTATGGAGCAGCCTATCGATCGGATGAGTAGCCAAGATGTAGAGCCGCTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCAACCCAAAATTGTCATCCTGGACTAGCCACCATGGAAACAAAGAAAAGGGGTTTGCTTGGTAGAAAGAAGCCGGTCCACCGGAAGTTGATCGACACGTTTGGACAAAGAACATCACAGTACAGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGTTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTTTGTCTTTCCTGTTGCTTGTCATGTTCCTCCAATGTTGTTGGCTGTTCTTCAAATCCATGTTTTGACTTCAAACCATTTCCTTGTTGCATGTCATGTTCAACTTCCATACGGATGCTGTTTAATTCAATTGTGTGGACTTCAGTTTATCTCGGTATGCCTTTGTTCAAGAACTCTGCGAAAGGAAGTCGATCACATGGAAGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACGCATTTGAACTTCCCGTTAAAGAGTTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTCGCCCATCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGGTGTGTTCATAAGACTCGATCCATGCTCGACTTTTTCTTACTCATTGAGTTTTCGACTGCTGTTTTCAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGACATAGCAGCCATCAAGTTCCGTGGCACAAACGCGGTTACAAACTTCGACACTTCAAGATACAACGTAGAAAGGATCATGGCGAGCAGCAGCCTTCTTTCAAGAGAGATAGCAAGACGAAACAAAGAGCACAAACTAACCAACGCAATCGAGCGCAAAGAACCGACACAAAACATCAATCAAATCGACCCCTCGGAGATATCCAACAGCAACAACATAGTTTGGAGGTCGGCATTCGACAACACGATGTTGCTGGATCGAAACACAACCATTGAATCCATAGAGCGAAAGTTGGTAACATCCTGTGGTTACCTAAACCATCTAATGGGAGTGGAAACGGCAACGGTGAAGGATTCAAGGAAGTTCAAGGCACATTTCTCCAATGCTTCAGTTTCTTTGCCTGTTATGTCAAGTGTTAGGAATGATGTCTGA 1713 43.43 MPNSFLASQHYNGDLVSPLSVMPLNSDGSLCFMESLSTLQPQEMLPNISPKLEDFLGSANHGREATALSLDSIYYNQNDGAEAVSERQHCLNLFKQQEQHILFGMFQFPAEDANKESLIASHSYEIRHAMEQPIDRMSSQDVEPLSLSMSPGSQSSCVTAPTQNCHPGLATMETKKRGLLGRKKPVHRKLIDTFGQRTSQYRDIDGLVDMRLICGIIVVRRKAKPGKEDKVCLSCCLSCSSNVVGCSSNPCFDFKPFPCCMSCSTSIRMLFNSIVWTSVYLGMPLFKNSAKGSRSHGSGYDMEEKAARAYDLAALKYWGPSTHLNFPLKSYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRCVHKTRSMLDFFLLIEFSTAVFRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGTNAVTNFDTSRYNVERIMASSSLLSREIARRNKEHKLTNAIERKEPTQNINQIDPSEISNSNNIVWRSAFDNTMLLDRNTTIESIERKLVTSCGYLNHLMGVETATVKDSRKFKAHFSNASVSLPVMSSVRNDV 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13364902 13367629 - CmoCh01G018250.1 Cmo01g01825 375308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g01825 570 Pfam AP2 domain 390 436 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 10 105 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 289 372 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 105 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 390 566 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 204 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 289 372 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 390 566 - -
Cmo01g01825 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 132 204 - -
Cmo01g01825 570 Gene3D AP2/ERF domain 274 329 IPR036955 GO:0003700|GO:0006355
Cmo01g01825 570 Gene3D AP2/ERF domain 388 446 IPR036955 GO:0003700|GO:0006355
Cmo01g01825 570 SMART rav1_2 289 333 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 SMART rav1_2 390 450 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 SUPERFAMILY DNA-binding domain 290 328 IPR016177 GO:0003677
Cmo01g01825 570 ProSiteProfiles AP2/ERF domain profile. 175 327 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 ProSiteProfiles AP2/ERF domain profile. 363 444 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 CDD AP2 362 446 IPR001471 GO:0003700|GO:0006355
Cmo01g01825 570 SUPERFAMILY DNA-binding domain 392 445 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01825 Cmo05g00125 CCT
Cmo01g01825 Cmo12g00550 CCT
Cmo01g01825 Cmo09g00310 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00043 Cmo-Chr1:133673 Cmo01g01825 Cmo-Chr1:13364902 6.91E-90 dispersed
Cmo01g01825 Cmo-Chr1:13364902 Cmo09g00310 Cmo-Chr9:1336180 1.93E-49 dispersed
Cmo01g01825 Cmo-Chr1:13364902 Cmo03g00934 Cmo-Chr3:7088777 1.63E-30 wgd
Cmo01g01825 Cmo-Chr1:13364902 Cmo05g00125 Cmo-Chr5:542544 1.87E-114 wgd
Cmo01g01825 Cmo-Chr1:13364902 Cmo07g00637 Cmo-Chr7:2876799 3.02E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9146 PF00847 AP2 2.10E-08 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g01825 K09285 - jre:108983297 357.066