Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo01g02027 ATGGCACTCTCAACTTCCTTAGCAATAAACGCAGAGAAAAGCAGAAAAATGAAACCCATCAACACTAAACGCAGAAAAAAGCACCAACACCCACCTCCCTCCCAACCGCCGCCGCCGCAGCCGCCGCCCTCTGCCCAATCTTCATGGGACCAAATCAAGAACCTCATCACTTGCAAGCAGGTGCGTCTAAATTTCATAGCTTACCCCTACATTTCAAAAATGGAGGCTTCGAGAGTTCACGAGCCGGCAAAACGCTCGCCGGCGAATTCGAAGTTGGGTTCTTCTTGCAGCTCCATTTGTAGGTTTAGAGACGTGGTCCATGGCAACGCCAAAATTGTTCACAGACCCGACAACTCACCGGAAACCAGCTCCCTCGGACAAGAAACTAGGTTACTCACTACAAAAGCTACAAACGGTTCATCGTCTCGTTCTTTGACAGCTCCGACCAGAACCAAAAACGGTGCTTCTGCTTCATACTCCTCTTCTCGAGGATTACAATTACGAAAGCTTTCTGGGTACCCGATTCCGAGGAGTTCTATTTGCCCTTGTCCTCAATGTGGAGAGATGTTCCCCAAAATTGAAAGCTTAGAGCTTCACCAAGCGGTTCGCCACGCTGGTATTTTCCAAATTCTTTTTATGGGTTATTTTAAAAGGGTAAATAGAAAATTGTATAAAAAAATCGCTTTCGTGGCCATGGGGTTTTGCCTTCACTCATACACCACTGCTGACGAGGAGTCTTACTTGGTGTATAAATCTGCACGACCGTTGACTCCACCGACACGAAAATGTAGGTGTCAAATCAAATCCATTAATTTTGTTTGTTTATTTGTCTTTTTAGTTTCGGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATCATTTTCAAATCAAGCTGGCTAAAAATAGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAAGACTGCCGCGATGCAGTGAAGACACGTGCACTCGCATGCGCTAGAAAAAACCCGCGGTGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGAGTTGTTGTGTGACCTCGGCTCACGTGGCTCAACCGGCCTGTGTGGCTCGATTCCCGGCTGCCGTGTCTGCAGCGTTATCCGTCATGGATTCCAGTGCAAGCCCGGTGAACCCGCTGGCGTACGAACCACGGCCAGTAGCGGTAGGGCCCATGATTCGTTCGAATGCGGCGATGGACGGCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGAAGAGTGAAGCGGATCGCGGAGGATTTGTCGGCCGCAGCGGTGGAGGAGGAGAATTTGTCGGCGGCGGCGGCCTCTTACGACTCCGTTTCACGACAGTCCGGGAAGTATTCGAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTCGTGATCTACGAAGCCCTCCAAACCTAA 1491 49.97 MALSTSLAINAEKSRKMKPINTKRRKKHQHPPPSQPPPPQPPPSAQSSWDQIKNLITCKQVRLNFIAYPYISKMEASRVHEPAKRSPANSKLGSSCSSICRFRDVVHGNAKIVHRPDNSPETSSLGQETRLLTTKATNGSSSRSLTAPTRTKNGASASYSSSRGLQLRKLSGYPIPRSSICPCPQCGEMFPKIESLELHQAVRHAGIFQILFMGYFKRVNRKLYKKIAFVAMGFCLHSYTTADEESYLVYKSARPLTPPTRKCRCQIKSINFVCLFVFLVSELGPDDSGRNIVEIIFKSSWLKIDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALACARKNPRCAADGNELLRFHCSELLCDLGSRGSTGLCGSIPGCRVCSVIRHGFQCKPGEPAGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRIAEDLSAAAVEEENLSAAAASYDSVSRQSGKYSNLEELIIFNPKAILPCFVVIYEALQT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14238762 14240666 + CmoCh01G020270.1 Cmo01g02027 375510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 205 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 279 495 - -
Cmo01g02027 496 SUPERFAMILY ADP-ribosylation 281 492 - -
Cmo01g02027 496 MobiDBLite consensus disorder prediction 1 48 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 279 495 - -
Cmo01g02027 496 MobiDBLite consensus disorder prediction 133 160 - -
Cmo01g02027 496 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 205 - -
Cmo01g02027 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 206 IPR013087 -
Cmo01g02027 496 ProSitePatterns Zinc finger C2H2 type domain signature. 181 204 IPR013087 -
Cmo01g02027 496 Gene3D - 277 494 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02027 Cmo09g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02027 Cmo-Chr1:14238762 Cmo15g00715 Cmo-Chr15:3476055 6.27E-79 dispersed
Cmo01g02027 Cmo-Chr1:14238762 Cmo09g00104 Cmo-Chr9:494843 1.38E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9165 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo01g02027 - - csv:101222539 500.36