Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00305 ATGGAGACTGGAGGCAATTCATTACCATCTGGGCCTGATGGCGTGAAGAGGAAAGTCAGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCGCATCGCATCCGAATGACGCATGCCCTTCTCGCTCATTATGGCTTACTACAGCATATGCAGGTTTTCAAGCCTGTTCCTGCTAGGGACAAAGTCCTTTGCAGATTTCATGCTGATGATTATGTGGCGTTTCTTAAAAGCATTACCCCTGAAACGCAGCAAGATCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCGGTCTTTGATGGCCTCTACTCTTTTTGTCAAACTTATGCTGGTGGATCTGTTGGTGGTGCTGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTCAATTGGTCTGGTGGGCTACACCATGCGAAGAAGTGCGAAGCTTCTGGATTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAGCTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATCGATATCCACCATGGAGATGGTGTGGAGGAGGCTTTTTACACAACCGACAGGGTCATGACTGTATCATTCCACAAATTTGGAGATTATTTTCCTGGTACAGGTGATATACGAGACGTTGGTTATGGAAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGATGGAATTGATGACGAGAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGAGCTGTTGTTCTCCAATGTGGGGCTGACTCTCTTTCTGGAGATAGGCTTGGATGCTTTAACTTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTGTTACTTGGTGGGGGTGGCTACACCATCCGTAATGTTGCTCGCTGCTGGTGCTATGAGACAGGAGTTGCACTTGGGATGGAGGTTGATGACAAAATGCCACAACATGAATATTACGAGTATTTCGGTCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTGGAAGAAATACAGGGGAAGCTGCTTGATTACCTCTCAAGGCTTCAGCATGCACCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACCGAACTCCCAGAGGTGGATGAAGACCGGGAGGACAAGGATGAGAGACGGGATCCAGATTCAGATATGGAAGTTGATGATGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACGGTTGAGTCTGAAATCAAAGATCCGGAAGTTAATGTCGATAGTACTAGAGGTTTAGAAAAAGCTGCAGCAGCCGAGGCTACAAGCGCAAAGGCTTTAGACATAGGTTCTCTCAAAATCGAAGAGCCAGGCGTAAAGCTTGAAGAAACCAGCAAGCAGAATGACCAAATGTTACCCTAA 1482 44.06 METGGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPVPARDKVLCRFHADDYVAFLKSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGYGKGKYYSLNVPLDDGIDDESYHFLFKPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHQMLEEIQGKLLDYLSRLQHAPSVQFQERPPDTELPEVDEDREDKDERRDPDSDMEVDDERKPIPSRVKRETVESEIKDPEVNVDSTRGLEKAAAAEATSAKALDIGSLKIEEPGVKLEETSKQNDQMLP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1544517 1548653 + CmoCh02G003050.1 Cmo02g00305 375902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00305 493 PANTHER HISTONE DEACETYLASE 19 3 489 - -
Cmo02g00305 493 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 MobiDBLite consensus disorder prediction 473 493 - -
Cmo02g00305 493 PIRSF HDAC_I_euk 5 463 IPR003084 GO:0004407|GO:0016575
Cmo02g00305 493 MobiDBLite consensus disorder prediction 395 449 - -
Cmo02g00305 493 PANTHER HISTONE DEACETYLASE 3 489 - -
Cmo02g00305 493 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Cmo02g00305 493 MobiDBLite consensus disorder prediction 385 453 - -
Cmo02g00305 493 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cmo02g00305 493 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cmo02g00305 493 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cmo02g00305 493 Pfam Histone deacetylase domain 36 324 IPR023801 -
Cmo02g00305 493 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00305 Cmo11g01384 CCT
Cmo02g00305 Cmo20g00687 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00305 Cmo-Chr2:1544517 Cmo11g00076 Cmo-Chr11:355753 0 dispersed
Cmo02g00305 Cmo-Chr2:1544517 Cmo20g00687 Cmo-Chr20:3387479 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00305 K06067 - csv:101214717 967.222