Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00400 ATGCTGTCGAAGTCGGAGATGACAATGTCGGAAAAACAGAGGACTCCAGTCAAATGGCGGCGAAGCCACGGTGACTGCCACAGCTTGTCGCCCGTCTCGAATCAAGCGAGCCGGGTCAATGATTTTCAGGATCTGCTTGCACCTGGAGGTTGGCCTGAGTTGACCAAGTACGAGTTCTCCTCCACCGAGACATGTTCGCCACCGCCGGAGGTGATCTCCAAACCCAGAAAAGCGAACTCCGTGGCGGTCGGAGAGATTCCGAAGAAGAGAAAGGCCAACAAGAACAAGGAACTGAAATCCAAACTGGGTAATGCTGAATCTGACAAAAGAATCAAACCAAATAATCAAGAAGAAGAACAACAACAATCAAAGATAACAGAGGAAACAGAGGAAACAGAGGAAACAGAGACGTCGAAACAGAGTTCAAGAGCTTCTGATTACGTTCATGTAAGAGCCCGTCCAGGCCAAGCTACAGATAGCCACAGTCTCGCAGAACGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAACTTGGTACCTGGGTGTAACAAAATTGCAGGAAAAGCTGGAATGCTGGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGGTGATGTTCTTATCCATGAAGCTGGCCACTGCGAATCCGAGACTCGATTTCATCAATGTCGATGACCCTTTTTGTAAACAGGTGTTTCCGGCGACGGAAATCTCCCCGGAAACGGCTACTTCTTCATCGTACTTTAATGAGCTTGGAATCAGCTCAAGTTCTGTAACAGTCCCACAAACTCCATTGATCAGCTCAGCTTCTGTTACTCAATTGGAGCTCTGTTCAACTTGGGGAGATGATTTACAAAGGGTTTGCAGTATGAGCTTAGAAGAAGGAGGGCCGCCATTGTTGTCGCTATCGAGCTTTCTGTGGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTCGGTCCATTTTAA 1014 46.35 MLSKSEMTMSEKQRTPVKWRRSHGDCHSLSPVSNQASRVNDFQDLLAPGGWPELTKYEFSSTETCSPPPEVISKPRKANSVAVGEIPKKRKANKNKELKSKLGNAESDKRIKPNNQEEEQQQSKITEETEETEETETSKQSSRASDYVHVRARPGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEVMFLSMKLATANPRLDFINVDDPFCKQVFPATEISPETATSSSYFNELGISSSSVTVPQTPLISSASVTQLELCSTWGDDLQRVCSMSLEEGGPPLLSLSSFLWQQYPGIEDEKETFVDDKVVGPF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2069636 2071039 - CmoCh02G004000.1 Cmo02g00400 375997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00400 337 MobiDBLite consensus disorder prediction 83 128 - -
Cmo02g00400 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Cmo02g00400 337 MobiDBLite consensus disorder prediction 58 164 - -
Cmo02g00400 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 214 IPR036638 GO:0046983
Cmo02g00400 337 MobiDBLite consensus disorder prediction 1 37 - -
Cmo02g00400 337 PANTHER TRANSCRIPTION FACTOR BHLH63 75 256 - -
Cmo02g00400 337 SMART finulus 162 212 IPR011598 GO:0046983
Cmo02g00400 337 Coils Coil 88 108 - -
Cmo02g00400 337 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Cmo02g00400 337 Coils Coil 115 135 - -
Cmo02g00400 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 256 IPR024097 GO:0006355
Cmo02g00400 337 CDD bHLH_AtBPE_like 146 233 - -
Cmo02g00400 337 MobiDBLite consensus disorder prediction 11 25 - -
Cmo02g00400 337 Gene3D - 155 226 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00400 Cmo20g00857 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00400 Cmo-Chr2:2069636 Cmo08g00241 Cmo-Chr8:1463780 4.19E-44 dispersed
Cmo11g01117 Cmo-Chr11:6266486 Cmo02g00400 Cmo-Chr2:2069636 1.85E-57 wgd
Cmo19g00689 Cmo-Chr19:7294534 Cmo02g00400 Cmo-Chr2:2069636 6.63E-61 wgd
Cmo02g00400 Cmo-Chr2:2069636 Cmo20g00857 Cmo-Chr20:4313087 6.65E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9214 PF00010 HLH 2.60E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00400 - - cpep:111795128 419.853