Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g00566 ATGGAGTATGAGGGCACTGGTAAAAACGCCGTATCCTTGAGATCTTCTGTGGCCGCGGTGCTCGAGGTGGAGGACGACGACGGGGACATGACGCTTGCTCAGTTGTCCAGGAACCCCCGGGACAGGCTTGCTTCCTCCTCGGGTAAAACGCGGAAGCAAATGGAGGACAATCCGATGCTTCAGAAGGTTAAACAGAGACTTGCGGATTGGAAAACTAGCCATGCTGTAACGGGTCCTGGAGGGAAGTTTATGAGCTTTGAGCAAAATAAGGCAGCATATGAGGAGCAATGCTCACCTGGGGAATTTAAGTCGTCCGCTGTGATGCGAGCACTTGAGGTTCGATCAAAATTGGAACAGGAATTTCCTAGCTTCGTGAAGTCATTGGTCAGATCACATGTTGCTAGCTGTTTTTGGATGGGACTTCCTGCGGTATTCTGCAAGTCATACTTGCCAGTAAGAGATAGTACAATGATCCTGGAAAATGAAGCTGGGAGACAATTTCAAGTAAAATATATCGCACATAAGACGGGGTTGAGTGCTGGATGGAGACAATTTTCTGCTGCACACAAGTTACTTGAGGGTGATGTTCTTGTCTTTCAACTGGTAGCGCCCACAAAATTTAAGGTAATATCTTGGATTTTTTCATTATATAGCGTTTATGTTATAAGGACATGTGATGTGACAGAAATGGATGGTACCCTTGGCCTACTAAACTTGGAGTCTCATACTAAACAAAGTGATGCAGGAAAAGATACTGAAAATAAGGGAGACGCGGCTGGCGACATTTCGATCAAGAAACGAGCAAAGTCTGCTGTACCCGACACGACTGAAAGGCTGAGAAATCCAAGCCCGTTGAGGTCAAGACCAAGGCAGCAGGTAGCAGCAGAGCATTCTGAACATACCAGTGAAGAGGTTGTCTCAGAAATAGTGGAGGTTTTCAGCTTCTATCAGCCTGCGGTTCCATTTAAGAAAGTCAAAAGCTTCGAGGACTTCAACATTGTAATCGATGGGATATCGATAAATGCAGAACTGCCAAGAGACCTGCGGAAGAGGTATTATAAACTTTGCTGCAGTCAGGACATGTTTCTCCATGAAAATCTCATCCCAGGCATGAACCGCAACTTAGTCACCGGAGTTATTTCCGAAACAATAACCATCGCCAACGCCATTAAAGCTTGCGACCTCTCTACTTCACGGGAGGAGTTTTCTACATGGGACAAAACCCTCCGAGCCTTTCAGCTCTTCGGTATGAATGTTGGGTTCTTACGTAATCGTCTCCATAGGCTGGCGAATCTTGCTTATGAGTCGGAGAATGCGTTGGATGTAAGAACGCTGGTAGATGCTAAAAATGACCAAGTGCATGTGCATGATGAAATCAGAAACATTGAGACGAAGCTTGTTGAGTTGAAGGAAGCTTGTGATAAATTTGGAGCTGCCATTGATGGCTTAGAGTCAAAAGCTGAGGTGTACAAGTCCAAGTTCCTGGAAGAAGTTTCTGCTCCATGGTAA 1509 45.66 MEYEGTGKNAVSLRSSVAAVLEVEDDDGDMTLAQLSRNPRDRLASSSGKTRKQMEDNPMLQKVKQRLADWKTSHAVTGPGGKFMSFEQNKAAYEEQCSPGEFKSSAVMRALEVRSKLEQEFPSFVKSLVRSHVASCFWMGLPAVFCKSYLPVRDSTMILENEAGRQFQVKYIAHKTGLSAGWRQFSAAHKLLEGDVLVFQLVAPTKFKVISWIFSLYSVYVIRTCDVTEMDGTLGLLNLESHTKQSDAGKDTENKGDAAGDISIKKRAKSAVPDTTERLRNPSPLRSRPRQQVAAEHSEHTSEEVVSEIVEVFSFYQPAVPFKKVKSFEDFNIVIDGISINAELPRDLRKRYYKLCCSQDMFLHENLIPGMNRNLVTGVISETITIANAIKACDLSTSREEFSTWDKTLRAFQLFGMNVGFLRNRLHRLANLAYESENALDVRTLVDAKNDQVHVHDEIRNIETKLVELKEACDKFGAAIDGLESKAEVYKSKFLEEVSAPW 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3282669 3286599 - CmoCh02G005660.1 Cmo02g00566 376163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g00566 502 MobiDBLite consensus disorder prediction 30 56 - -
Cmo02g00566 502 CDD B3_DNA 122 209 IPR003340 GO:0003677
Cmo02g00566 502 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 26 439 IPR044837 -
Cmo02g00566 502 Pfam B3 DNA binding domain 124 214 IPR003340 GO:0003677
Cmo02g00566 502 SUPERFAMILY DNA-binding pseudobarrel domain 118 210 IPR015300 -
Cmo02g00566 502 MobiDBLite consensus disorder prediction 267 300 - -
Cmo02g00566 502 ProSiteProfiles B3 DNA-binding domain profile. 124 215 IPR003340 GO:0003677
Cmo02g00566 502 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 26 439 - -
Cmo02g00566 502 SMART B3_2 124 216 IPR003340 GO:0003677
Cmo02g00566 502 Gene3D - 103 216 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00566 Cmo19g00628 CCT
Cmo02g00566 Cmo19g00628 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00566 Cmo-Chr2:3282669 Cmo19g00628 Cmo-Chr19:6853976 6.86E-35 dispersed
Cmo02g00566 Cmo-Chr2:3282669 Cmo04g00537 Cmo-Chr4:2671750 6.13E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9228 PF02362 B3 1.50E-15 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g00566 - - csv:101211030 743.421