Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01102 ATGGCTGCCGGAGACGACGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCTATTCAGGCTCCTCCACCTCCTCCACCTCCACCGCCGCCGACCCAACTGCCGCTTCCGCCGCAGAAACCGCCTTGTCTTGTCTCGCTTCCTTAACTTTTGACGACGATCCAAACAACGTCGCATTCTCCTTTTCCGACATCCTTCACCCCCAACAGCCCAACGGCTTCCATGAATTACACCAAGCCTTCATTTCTTTCCTCCCCAACCCCGTCGCCCCCGCCGTCGCCCCCGCCGCACCGGAAATCCCCAATCCGGTTCCAACCCGCCAATCCCGACACGGAATTAAACCCATTCGACCACAGCCAGATCCCGGAGCGGTGGCGCTGCAATCCCATCACCGGCAACAGCCACTTTTCCGGCCAGACTTCCCAAATTCACCAATGACGCCTCCTCACATACCCAAATCGAGAAAAAGGCAAAATCAACAGAAGAGAACCGTATGCCATGTGACTGCTGATAATCTCTCAACAGACATGAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCAAGAAAGCAAGTTGAACGGAGCAACGCCGACCCAGAAACTTTCATCGTCACATACACTGGAGATCACACTCATCCACGTCCAACTCATCGAAATTCCCTTGCCGGGAGTTCCCGAAACAGGTCGTCGTCTGCAATTCCCACGAAAAACCTGACGATAGGAGACCCTGATCGGTTATTGCTCGGCACAGCCACCGTGGGCTCTCCGATGACACCGCTTAACGAAGACGGCGGGAGCGGAGAGAAAGAAGGAGAGATTTTGGAGGATTTGAGCATTGATAGTGAGGAGTACGAGGATAATGATATTCTAATTCCAAATTTGATGATGAGAAATGAAATCTTTGTTGGGTTTGAGGAGCTTGGTTGTAGTCCTCGAAGGAAGGCTTGA 951 53.42 MAAGDDDWDLSAVVRSCYSGSSTSSTSTAADPTAASAAETALSCLASLTFDDDPNNVAFSFSDILHPQQPNGFHELHQAFISFLPNPVAPAVAPAAPEIPNPVPTRQSRHGIKPIRPQPDPGAVALQSHHRQQPLFRPDFPNSPMTPPHIPKSRKRQNQQKRTVCHVTADNLSTDMNYYRCSSSKGCGARKQVERSNADPETFIVTYTGDHTHPRPTHRNSLAGSSRNRSSSAIPTKNLTIGDPDRLLLGTATVGSPMTPLNEDGGSGEKEGEILEDLSIDSEEYEDNDILIPNLMMRNEIFVGFEELGCSPRRKA 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6677813 6679130 + CmoCh02G011020.1 Cmo02g01102 376699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01102 316 MobiDBLite consensus disorder prediction 207 244 - -
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 176 - -
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 176 308 - -
Cmo02g01102 316 SUPERFAMILY WRKY DNA-binding domain 174 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 MobiDBLite consensus disorder prediction 218 238 - -
Cmo02g01102 316 Gene3D WRKY domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 MobiDBLite consensus disorder prediction 96 163 - -
Cmo02g01102 316 ProSiteProfiles WRKY domain profile. 177 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 SMART WRKY_cls 173 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 176 IPR044810 GO:0003700
Cmo02g01102 316 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 176 308 IPR044810 GO:0003700
Cmo02g01102 316 Pfam WRKY DNA -binding domain 173 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01102 Cmo16g00630 CCT
Cmo02g01102 Cmo16g00630 ECH
Cmo02g01102 Cmo15g01124 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01102 Cmo-Chr2:6677813 Cmo06g01113 Cmo-Chr6:8571167 1.00E-31 dispersed
Cmo14g02126 Cmo-Chr14:15377304 Cmo02g01102 Cmo-Chr2:6677813 9.19E-32 wgd
Cmo15g01124 Cmo-Chr15:7806671 Cmo02g01102 Cmo-Chr2:6677813 1.03E-115 wgd
Cmo02g01102 Cmo-Chr2:6677813 Cmo04g00768 Cmo-Chr4:3846274 3.78E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9278 PF03106 WRKY 5.40E-13 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01102 K13425 - cmo:103482922 370.548