Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01182 ATGCAACATTCTGTTGGATTTCATGTTAGTTTAGGACCTATTATATTATGCTTGACTGGTTATGAGGAGTTGAGTTATCTGAAGAATATGGATTTCCAGCGCCCCTTTTCTTCTTCTTCTTCCTCCTCGGTTAATTTCTCCCTCTTTTTCTGCTCCTGCTCCTTCGTTTCTGATCACGCCTCCGCCTCCGACGACTGTGAAATGGCTGAGGCCGTGGTGGCGACTTCTGAGGGTGTGGATTTTGGTTATGCGACGGCCGAAATCGAGAACAATAGAGAAAACAGTTCAAATGGACTTGGGATTGGGATCAAGTGGGATTGCTTTTTGCCCAAGGTCATGCTCAGGGTCTTGCTTGTTGAAGCTGACGATTCCACCAGGCAGATTATCACTGCTCTTCTCCGCAAGTCCTGCTACCGAGTTGCTGCTGTTCCTGATGGCATGAAAGCGTGGGAGATTCTCAAAGCAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTACCATCAATGTCTGGATTTTCTCTGCTAACTCTGATCATGGGGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACCGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTTAAGCCCTTAAGGAGAAATGAACTGAGTCATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCAATGCAAGAACTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCACTCCACTGATTATGTTGCTGGAGTTGAGAGGAATGACAACAACACTGAGAAAGGGAGTGATACTCAGAGCTCTTCTACAAAGGTAGATTTTGAGGCTGGTAGTAAGATGCAGGAAAGTTCACAGCCGAGGCAGGAAAAAGCCTCTTCAAATGACTTCAAGCTACAGAAAGATGGGGGTCACATCAATTTGAGTCAGAGATTGGCTATACATGAAAATGAATCTGGAGGATTGGCAATGAGTTGCTATGCCAATGATGATTTACCAATTACACTAAGCATGGGTCTTGAGCCGACCAATGATGGGAGAAGTCCTTATATTGCTAGTGAAGCAGAGGATTTGCTTGCCAACCCATCTAGAGATGCAACTGCGTTGAATCATGCCTGTATCAATTATCCCGATGACTACCAAAGAAGATCTCCTTCCACTGTTGCTGCCACAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTAAGAAGATGTCAACCTAATGATTTTGAGGACCGTGCTGCAGAAGGACGAGCTACCCTCAAACATTCCAGTGCTTCAGCTTTTACAAGATACACTTCCAGGCCATTGCAAACACTTCAAGCAAAATCAAGCAGTATCTGTGATGAACAAAAAGAATTTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTCCTACCTCTGATACCATTAATACTACGCTAAGTCTGCAAAACAGTAATACTTCTATGCCCCTGATGACAAGTCTATCTGCTCTCTCTGAAGTTGCAAAATCAAGTACTTCAGAGACAGAAATCCCTCATCAAGTTACAGTGAAAGATTTGATGTCTAATAGTCAATGCTCTGGCCATGGCTCTTTGCTTTCTCCCAACTTGTGCACACAAGGGGGTGCGTCATCGTCTCCATGCTCAACTTTAGTCACTCATCCCGAACCCATCTTGGCAAAACAGACAGTTTATCCCCTAAACCTTGAGAATCATAATTTGGAGCAGTTTCTGAACCAGCATCCCAACACAAGTGATTCAGGAAGCCGAAAGTTAGAGAACTCAGGGAAGAAGTTGGAGTATGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAGTCTATGTGGTGGTAATACAAGTCATGTTCGAAGCGTGGGATATCCTAGCACATGCGGAAGCAACAACAATGTCGACCGGGTTGGCATTGCTGCAAGGGTTACATCTGAGACCAAAAATGAAGAAGCTTTGTCTTATCAAGGAGGAGATCCTCACCGGAGCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAGCGAAAAGATCGATGTTATGATAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCAGAACAGCGTCCTAGAGTGAAGGGTCAGTTTGTCCGTAGAGTATACACTGATGATCCATTGCCTGCAGAAAGCAACGCCAATACATCCAACGGTTAG 2253 43.99 MQHSVGFHVSLGPIILCLTGYEELSYLKNMDFQRPFSSSSSSSVNFSLFFCSCSFVSDHASASDDCEMAEAVVATSEGVDFGYATAEIENNRENSSNGLGIGIKWDCFLPKVMLRVLLVEADDSTRQIITALLRKSCYRVAAVPDGMKAWEILKARPRNVDLILAEVELPSMSGFSLLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELSHLWQHVWRRQASSNARTDIQEKVEVTSENETASNHSTDYVAGVERNDNNTEKGSDTQSSSTKVDFEAGSKMQESSQPRQEKASSNDFKLQKDGGHINLSQRLAIHENESGGLAMSCYANDDLPITLSMGLEPTNDGRSPYIASEAEDLLANPSRDATALNHACINYPDDYQRRSPSTVAATNNFGSALHLDLSLRRCQPNDFEDRAAEGRATLKHSSASAFTRYTSRPLQTLQAKSSSICDEQKEFGSNPEHIGSIAATPTSDTINTTLSLQNSNTSMPLMTSLSALSEVAKSSTSETEIPHQVTVKDLMSNSQCSGHGSLLSPNLCTQGGASSSPCSTLVTHPEPILAKQTVYPLNLENHNLEQFLNQHPNTSDSGSRKLENSGKKLEYAENQGHISPTTDHSANSSLCGGNTSHVRSVGYPSTCGSNNNVDRVGIAARVTSETKNEEALSYQGGDPHRSSQREAALTKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRRVYTDDPLPAESNANTSNG 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7085038 7091096 + CmoCh02G011820.1 Cmo02g01182 376779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01182 750 MobiDBLite consensus disorder prediction 249 270 - -
Cmo02g01182 750 Pfam CCT motif 690 732 IPR010402 GO:0005515
Cmo02g01182 750 MobiDBLite consensus disorder prediction 249 319 - -
Cmo02g01182 750 CDD psREC_PRR 116 219 - -
Cmo02g01182 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR 92 723 IPR045279 GO:0009736
Cmo02g01182 750 MobiDBLite consensus disorder prediction 278 309 - -
Cmo02g01182 750 ProSiteProfiles Response regulatory domain profile. 115 233 IPR001789 GO:0000160
Cmo02g01182 750 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 92 723 - -
Cmo02g01182 750 Pfam Response regulator receiver domain 116 226 IPR001789 GO:0000160
Cmo02g01182 750 SUPERFAMILY CheY-like 113 249 IPR011006 -
Cmo02g01182 750 SMART REC_2 114 229 IPR001789 GO:0000160
Cmo02g01182 750 Coils Coil 745 750 - -
Cmo02g01182 750 Gene3D - 114 346 - -
Cmo02g01182 750 ProSiteProfiles CCT domain profile. 690 732 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01182 Cmo15g01055 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00841 Cmo-Chr1:4482550 Cmo02g01182 Cmo-Chr2:7085038 2.51E-15 dispersed
Cmo02g01182 Cmo-Chr2:7085038 Cmo03g00476 Cmo-Chr3:5175369 2.24E-17 dispersed
Cmo14g02228 Cmo-Chr14:15799629 Cmo02g01182 Cmo-Chr2:7085038 1.28E-104 transposed
Cmo15g01055 Cmo-Chr15:6845235 Cmo02g01182 Cmo-Chr2:7085038 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9284 PF00072 Response_reg 8.60E-21 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01182 K12130 - csv:101209788 1023.46