Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01662 ATGGGATCTTATGGCACCCCAAAAACTTGGATACCATATATGAGCAATAAAGATTGCTCTCAAGGGTTCTGTAGTGTATATTGTCCTCAGTGGTGTTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCTCTTGTGATTGCAATTATTGGAATTCTGGCCAGTGCTTTTCTTCTTATAACCTATTACACCATCATTTCAAAGTATTATGGCAACACGAGCCGCTTGTCTAGGACTCAAGATCATGACCCAAATCAGGAGTTTGAAGATACTCACAACCCAACACTCCACGAGCCGTGGCATGTCGCCACTACTGGCTTGGATGAAGCATTGATCAAGTGCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAACCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGCCGTGCAAACATCGTCTCTGTCACTGCTTCTTCTCCACTTCAACTGCCTGCAACCACTGGAAACCCCACAACTAATGAGGCCATTCCAGAGACCTCTCAGGCAAATGACCATGAGGGTATTTCACAGGAACCTGGAAGAAGTTTTGGCAATGACAATGCTAAGAACTCAGTTCGCGCTTTCAGTGACCTTGGAAATTTGGTGAAAAGAGATACTTTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCAGATGAGTTTGGAGGTATTGATGAAGCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCAATGGGAGAAGACAGCAAGTCAAATCATAGAAAAAGAATCCTACATTGTGTGATGAGTCCTGTCTCAATGAAGAGATCATTCTCAAGTGGAAGATTTTCTCTCACGAAACATGGAAGAGAACACAGAGGACTTGCCCCTGTCTGA 1059 43.15 MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDEALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDENLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVTASSPLQLPATTGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKNSVRAFSDLGNLVKRDTFIELRDGRLQQIRRSISMDHCSQNHIIIADEFGGIDEAGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9563701 9564759 + CmoCh02G016620.1 Cmo02g01662 377259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01662 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cmo02g01662 352 SMART ring_2 143 184 IPR001841 -
Cmo02g01662 352 MobiDBLite consensus disorder prediction 199 237 - -
Cmo02g01662 352 CDD RING-H2_PA-TM-RING 142 185 - -
Cmo02g01662 352 MobiDBLite consensus disorder prediction 293 314 - -
Cmo02g01662 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 266 344 IPR044675 -
Cmo02g01662 352 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 225 IPR044675 -
Cmo02g01662 352 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cmo02g01662 352 SUPERFAMILY RING/U-box 137 192 - -
Cmo02g01662 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 266 344 - -
Cmo02g01662 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 225 - -
Cmo02g01662 352 Pfam Ring finger domain 142 185 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01662 Cmo19g00246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00628 Cmo-Chr1:3232010 Cmo02g01662 Cmo-Chr2:9563701 1.40E-15 dispersed
Cmo02g01662 Cmo-Chr2:9563701 Cmo06g01226 Cmo-Chr6:9301916 4.74E-67 dispersed
Cmo06g01336 Cmo-Chr6:9941655 Cmo02g01662 Cmo-Chr2:9563701 3.42E-37 dispersed
Cmo17g00166 Cmo-Chr17:982842 Cmo02g01662 Cmo-Chr2:9563701 6.32E-30 dispersed
Cmo20g00470 Cmo-Chr20:2168024 Cmo02g01662 Cmo-Chr2:9563701 4.92E-23 dispersed
Cmo04g00139 Cmo-Chr4:715119 Cmo02g01662 Cmo-Chr2:9563701 1.40E-17 transposed
Cmo20g00883 Cmo-Chr20:4456060 Cmo02g01662 Cmo-Chr2:9563701 1.48E-25 transposed
Cmo19g00246 Cmo-Chr19:1728060 Cmo02g01662 Cmo-Chr2:9563701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01662 - - cmo:103503554 642.499