Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01662 | ATGGGATCTTATGGCACCCCAAAAACTTGGATACCATATATGAGCAATAAAGATTGCTCTCAAGGGTTCTGTAGTGTATATTGTCCTCAGTGGTGTTACATCATGTTTTCACCTCCACCACCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCTCTTGTGATTGCAATTATTGGAATTCTGGCCAGTGCTTTTCTTCTTATAACCTATTACACCATCATTTCAAAGTATTATGGCAACACGAGCCGCTTGTCTAGGACTCAAGATCATGACCCAAATCAGGAGTTTGAAGATACTCACAACCCAACACTCCACGAGCCGTGGCATGTCGCCACTACTGGCTTGGATGAAGCATTGATCAAGTGCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAACCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGCCGTGCAAACATCGTCTCTGTCACTGCTTCTTCTCCACTTCAACTGCCTGCAACCACTGGAAACCCCACAACTAATGAGGCCATTCCAGAGACCTCTCAGGCAAATGACCATGAGGGTATTTCACAGGAACCTGGAAGAAGTTTTGGCAATGACAATGCTAAGAACTCAGTTCGCGCTTTCAGTGACCTTGGAAATTTGGTGAAAAGAGATACTTTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCAGATGAGTTTGGAGGTATTGATGAAGCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCAATGGGAGAAGACAGCAAGTCAAATCATAGAAAAAGAATCCTACATTGTGTGATGAGTCCTGTCTCAATGAAGAGATCATTCTCAAGTGGAAGATTTTCTCTCACGAAACATGGAAGAGAACACAGAGGACTTGCCCCTGTCTGA | 1059 | 43.15 | MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDEALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDENLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVTASSPLQLPATTGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKNSVRAFSDLGNLVKRDTFIELRDGRLQQIRRSISMDHCSQNHIIIADEFGGIDEAGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9563701 | 9564759 | + | CmoCh02G016620.1 | Cmo02g01662 | 377259 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01662 | 352 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 193 | IPR013083 | - | |
Cmo02g01662 | 352 | SMART | ring_2 | 143 | 184 | IPR001841 | - | |
Cmo02g01662 | 352 | MobiDBLite | consensus disorder prediction | 199 | 237 | - | - | |
Cmo02g01662 | 352 | CDD | RING-H2_PA-TM-RING | 142 | 185 | - | - | |
Cmo02g01662 | 352 | MobiDBLite | consensus disorder prediction | 293 | 314 | - | - | |
Cmo02g01662 | 352 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 266 | 344 | IPR044675 | - | |
Cmo02g01662 | 352 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 6 | 225 | IPR044675 | - | |
Cmo02g01662 | 352 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
Cmo02g01662 | 352 | SUPERFAMILY | RING/U-box | 137 | 192 | - | - | |
Cmo02g01662 | 352 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE | 266 | 344 | - | - | |
Cmo02g01662 | 352 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE | 6 | 225 | - | - | |
Cmo02g01662 | 352 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01662 | Cmo19g00246 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00628 | Cmo-Chr1:3232010 | Cmo02g01662 | Cmo-Chr2:9563701 | 1.40E-15 | dispersed | |
Cmo02g01662 | Cmo-Chr2:9563701 | Cmo06g01226 | Cmo-Chr6:9301916 | 4.74E-67 | dispersed | |
Cmo06g01336 | Cmo-Chr6:9941655 | Cmo02g01662 | Cmo-Chr2:9563701 | 3.42E-37 | dispersed | |
Cmo17g00166 | Cmo-Chr17:982842 | Cmo02g01662 | Cmo-Chr2:9563701 | 6.32E-30 | dispersed | |
Cmo20g00470 | Cmo-Chr20:2168024 | Cmo02g01662 | Cmo-Chr2:9563701 | 4.92E-23 | dispersed | |
Cmo04g00139 | Cmo-Chr4:715119 | Cmo02g01662 | Cmo-Chr2:9563701 | 1.40E-17 | transposed | |
Cmo20g00883 | Cmo-Chr20:4456060 | Cmo02g01662 | Cmo-Chr2:9563701 | 1.48E-25 | transposed | |
Cmo19g00246 | Cmo-Chr19:1728060 | Cmo02g01662 | Cmo-Chr2:9563701 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01662 | - | - | cmo:103503554 | 642.499 |