Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00536 ATGATTCATTTCCTCCCTCAAACACCGTCCTTGCCTTCAATTTTACTACTGATTTCAATCTCTGGACTAATAGTCCCTTGTTGTAGCCAACGCTATTTAAACTGCTCAGGAACCAACACGGCTCGCCCAAATCTGAATTCTGACATCAACTTCCTACTGAATTCCTTGACCTCTCGAGCTTCCTCTCACACTTTTTACACTGAGACCTATAATGGAATCCATGGCCTCTTTCTCTGCCGAGGGGATCTTCCTAATGAGGCCTGTCATACCTGCATCGAAGGAGCAAGTCAACAAATCAAAGTCACCTGCTCATCACAAACAAATGGTACCATAGGCTTTGATGAATGTATGTTGAGATACTCAGTTGTGAACTTCTTTGGGATCCTGGAGACAGTTCCGAGAATACTGTTATATAATAGTCTGAACCAATCTACTATTGAAGACCGTGATTTCATTGATCTTGCATTGGTGTCTAATTTAGTACAAGATGCTACAAATTCAAATATGATGTTCAAGGAAGGTGAGGTAAATGTGGGTGGTGTGGATCAGAGATTTGGACTGGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGACTTTTGCAAAGGGATGTTGCTTAAGGCAAAGAGGGTGGCGAGTTTTAGCTCCCAATTGTAATTTAAGGGTTGAGGCCTTTCAGTTTTATGGGATACCAGGACCTCCATCCTTGCCTCTTGATGAAGAAGGAGGCAACAGAACAAGGATCGTTGTCATCAGCATATCAACAGTTGCAGCAGCGGCAGTTCTGCTAGGAATGATTTATGCCTCATTTTTATGGAGAAACAAAAGGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGAGTTGATCAACAACTGGTTTACTCATTGAGACAACAGTTGGATGCATCAAATCAAGACAGTGATGGAGATATGCCTTTCTTCAGTTTTAGTTCTCTAAAGACTGCTACAGATGACTTCTCAGATGCTAATAAACTTGGAGAAGGCGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGATGGTGAGGAAGTAGCTGTGAAAAGACTATCAACAAAATCAAATCAAGGATATGAAGAGTTCAAGAATGAAGCAAAGGTCATCTGGAAGCTTCAACATAAGAATCTGGTTAGACTCCTGGGATATTGTGTTGAAGGAGAAGAAAAACTTCTAATCTATGAGTACATGGCAAATACAAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTCGACTGGCTCAAGCGCGAAAACATTCTCAATGGGATTGCAAGAGGAATTCTGTATCTCCATGAAGATTCTCGACTCAAAATCATCCACAGGGATTTGAAAGTGAGTAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGCTATATGGCGCCAGAGTATGCTATGGAGGGTGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTAATCCTGGAGGTGATCAGTGGGAGAAAGAGCATTGGTTTTCTAAACATGGACAGAGCGCAGAACCTTCTGTCATATGCATGGGAGCTATGGAATGAAGGTAGAGCAGAAGAAATGATAGATGAGAACCTGGCTGGAGATTATCGTGAGAGTGAGGCCGTAAAATGGATCCAGATTGGCTTGCTGTGCGTGCAAGAAGATGCTAACACCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAGGCGGTTCACCTTCCTCAGCCGTCAAAACCTCCATTTCTTACAGGTCGAGGGTCTATCAGTAGATATCAATATTCATCAACTGAAACAGGGACAGGGCTACTCACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1971 42.21 MIHFLPQTPSLPSILLLISISGLIVPCCSQRYLNCSGTNTARPNLNSDINFLLNSLTSRASSHTFYTETYNGIHGLFLCRGDLPNEACHTCIEGASQQIKVTCSSQTNGTIGFDECMLRYSVVNFFGILETVPRILLYNSLNQSTIEDRDFIDLALVSNLVQDATNSNMMFKEGEVNVGGVDQRFGLAQCTRDIIKRDCEVCLTNLVTFAKGCCLRQRGWRVLAPNCNLRVEAFQFYGIPGPPSLPLDEEGGNRTRIVVISISTVAAAAVLLGMIYASFLWRNKRERDRSEELPLRNRVDQQLVYSLRQQLDASNQDSDGDMPFFSFSSLKTATDDFSDANKLGEGGFGPVYKGKLMDGEEVAVKRLSTKSNQGYEEFKNEAKVIWKLQHKNLVRLLGYCVEGEEKLLIYEYMANTSLDAFLFDPLKCKQLDWLKRENILNGIARGILYLHEDSRLKIIHRDLKVSNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLILEVISGRKSIGFLNMDRAQNLLSYAWELWNEGRAEEMIDENLAGDYRESEAVKWIQIGLLCVQEDANTRPTMSMVVLMLGSQAVHLPQPSKPPFLTGRGSISRYQYSSTETGTGLLTTDQSSTTASI 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5440855 5444189 + CmoCh03G005360.1 Cmo03g00536 377999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00536 656 Pfam Salt stress response/antifungal 156 232 IPR002902 -
Cmo03g00536 656 Pfam Salt stress response/antifungal 35 121 IPR002902 -
Cmo03g00536 656 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 32 643 - -
Cmo03g00536 656 SMART serkin_6 337 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00536 656 SUPERFAMILY Protein kinase-like (PK-like) 321 608 IPR011009 -
Cmo03g00536 656 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 643 - -
Cmo03g00536 656 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
Cmo03g00536 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Cmo03g00536 656 ProSiteProfiles Gnk2-homologous domain profile. 131 236 IPR002902 -
Cmo03g00536 656 Gene3D - 27 125 IPR038408 -
Cmo03g00536 656 Gene3D - 137 236 IPR038408 -
Cmo03g00536 656 ProSiteProfiles Gnk2-homologous domain profile. 27 125 IPR002902 -
Cmo03g00536 656 ProSiteProfiles Protein kinase domain profile. 337 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00536 656 CDD STKc_IRAK 343 608 - -
Cmo03g00536 656 Gene3D Transferase(Phosphotransferase) domain 1 413 616 - -
Cmo03g00536 656 Pfam Protein tyrosine and serine/threonine kinase 341 606 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00536 Cmo13g00794 CCT
Cmo03g00536 Cmo07g00285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00536 Cmo-Chr3:5440855 Cmo13g00734 Cmo-Chr13:7283531 6.77E-135 dispersed
Cmo14g00677 Cmo-Chr14:3463304 Cmo03g00536 Cmo-Chr3:5440855 2.00E-106 dispersed
Cmo18g00787 Cmo-Chr18:9409551 Cmo03g00536 Cmo-Chr3:5440855 7.59E-102 dispersed
Cmo03g00534 Cmo-Chr3:5436193 Cmo03g00536 Cmo-Chr3:5440855 3.44E-144 proximal
Cmo03g00536 Cmo-Chr3:5440855 Cmo03g00537 Cmo-Chr3:5445392 0 tandem
Cmo18g00299 Cmo-Chr18:1945510 Cmo03g00536 Cmo-Chr3:5440855 1.37E-19 wgd
Cmo03g00536 Cmo-Chr3:5440855 Cmo07g00285 Cmo-Chr7:1395425 1.36E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74180 PF07714 PK_Tyr_Ser-Thr 6.40E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00536 - - cmo:103484582 1077.0