Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00798 | ATGGCCGCCGTCAATCTCCGACCCGACGACGACAACTCTACACTCATCTCCCACCTCTACAATCCTGAAATTTACACCCAAATGCTACCCCAACAAGGTACGGCAGAGGGAAACAAGCCGACGAAGCGACGGCGGAGGAGGAGCAGAGCGAAGGAGGTGGCCGAGGCCGCTGCCGGGTTGAAGAAGAGGAAGTTGAGTTCAGAGCAAGTGAAGCTTTTGGAAATGAACTTTGGAAACGAGCACAAATTGGAAACGGAGAGGAAAAATCGGTTGGCTTCAGAATTAGGCCTTGATCCAAGCCAAGTCGCCATCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACCAGAAACTGGAACACCAATATTCCATGCTCAAAAAAGCTCACGATTCTGCTGTTCTCCAAAAAACCCATCTTCAATCTGAGATAGAGAAACTGAAAGAGCAATTAGCGGAAGCGAAGAATGAGATACAGAAACTGGTGGAAGTAAGCGAGAGAAACCGTCGGTGGTCGGTGACGATGGATGACGTGCAAGCGGCGGCGTGTTGGGGAGAGATATTAATGGAAGAATATGAAGATGTATTCTATTCCATGCAGGAGAATAATTATAATGAACCAGTGGAGTGGACAATTTCCAGTGCTTTAAGTCCCTTCATTGGGGTTCATGATTCTGAAGATTTCGGTTCAGACTTCATCTTCAAGATCGAACCCAGTTTGCTCATTGACCCTCGTCGTTTGAAGATCGGCGAAGTTATTGGGGAAGGTTCATGCTCCATTGTCTATCAAGGACTGTACGATTGTCAACCTGTTGCCGTGAAGATTATACAGGCAAGCAGAACATCAGCTATAAGTCCTGAAAAGAAGGAGAGATTTCAAAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGCGCTTCCATAGAGCCGACATTGATGATAATCACTGAGCTTATGAAGGGTGGAACACTCCAGAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATTTGAAATTTTCCCTTAGTCTTGCTCTAGATCTGTCACGAGTAATGGCATACTTGCATGCAAATGGCATCATTCATCGCGATTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTAGCCGACTTTGGGTTGGCCAGGGAGGAAATATCTGGGGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCTCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTGTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCGAGTCTTGAGGACATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGTCTGAGGATCCCAATGGCCGTCCAGAATTCACACAAGTCATAGATTCTCTTTCTAATCTTCTTCAAACATTTGTGTTAAAAGAATCTTCACTTCCCAACATGGACGACAAAACAGAGAAGGAGGTGGATTGTGCATCAGACACTTCGGCTTCTCAGAGCAGGAGACAGCACAAGGCTAGAAGACATAGAAGCTCTTCATTCTGCCTCAAATTCTTCTTCGTCGGCAGAGGCGGTTTTAGTGGTGGCGCCACTCTTTTCTTCCGCCGTACACTGCATCTCTATGCTTCCCGTCGCCACCGCCAGCCGACAACAATCACACTCGCTCTCACACACATAAATCCACAATTCTCAGCCGTTGATCATCCAGTCAACAACCTACATATAGACACGCCTTCCACCTGGACTTCCACATCATTCCTCTTGAAGTTTTCTTGCGCCATGAAAGCAGGTTGGTCGTAG | 1920 | 46.67 | MAAVNLRPDDDNSTLISHLYNPEIYTQMLPQQGTAEGNKPTKRRRRRSRAKEVAEAAAGLKKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSMLKKAHDSAVLQKTHLQSEIEKLKEQLAEAKNEIQKLVEVSERNRRWSVTMDDVQAAACWGEILMEEYEDVFYSMQENNYNEPVEWTISSALSPFIGVHDSEDFGSDFIFKIEPSLLIDPRRLKIGEVIGEGSCSIVYQGLYDCQPVAVKIIQASRTSAISPEKKERFQREVMLLSRVNHENVIQFIGASIEPTLMIITELMKGGTLQKYLWSIRPETPDLKFSLSLALDLSRVMAYLHANGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEDIPEDIAPLLQSCWSEDPNGRPEFTQVIDSLSNLLQTFVLKESSLPNMDDKTEKEVDCASDTSASQSRRQHKARRHRSSSFCLKFFFVGRGGFSGGATLFFRRTLHLYASRRHRQPTTITLALTHINPQFSAVDHPVNNLHIDTPSTWTSTSFLLKFSCAMKAGWS | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6497862 | 6505046 | - | CmoCh03G007980.1 | Cmo03g00798 | 378261 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00798 | 639 | SUPERFAMILY | Homeodomain-like | 61 | 125 | IPR009057 | - | |
Cmo03g00798 | 639 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 366 | 378 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | Pfam | Homeodomain | 62 | 115 | IPR001356 | GO:0003677 | |
Cmo03g00798 | 639 | Gene3D | Transferase(Phosphotransferase) domain 1 | 327 | 555 | - | - | |
Cmo03g00798 | 639 | Pfam | Protein tyrosine and serine/threonine kinase | 246 | 504 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | CDD | STKc_MAP3K-like | 252 | 504 | - | - | |
Cmo03g00798 | 639 | SMART | HOX_1 | 59 | 120 | IPR001356 | GO:0003677 | |
Cmo03g00798 | 639 | PRINTS | Tyrosine kinase catalytic domain signature | 322 | 335 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | PRINTS | Tyrosine kinase catalytic domain signature | 475 | 497 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | PRINTS | Tyrosine kinase catalytic domain signature | 360 | 378 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | PRINTS | Tyrosine kinase catalytic domain signature | 433 | 455 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo03g00798 | 639 | ProSiteProfiles | Protein kinase domain profile. | 246 | 512 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g00798 | 639 | PRINTS | Lambda-repressor HTH signature | 96 | 112 | IPR000047 | GO:0003677 | |
Cmo03g00798 | 639 | PRINTS | Lambda-repressor HTH signature | 87 | 96 | IPR000047 | GO:0003677 | |
Cmo03g00798 | 639 | ProSitePatterns | 'Homeobox' domain signature. | 91 | 114 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo03g00798 | 639 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
Cmo03g00798 | 639 | MobiDBLite | consensus disorder prediction | 523 | 545 | - | - | |
Cmo03g00798 | 639 | Gene3D | Phosphorylase Kinase; domain 1 | 235 | 326 | - | - | |
Cmo03g00798 | 639 | PANTHER | PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED | 222 | 538 | - | - | |
Cmo03g00798 | 639 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 116 | IPR001356 | GO:0003677 | |
Cmo03g00798 | 639 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 222 | 538 | - | - | |
Cmo03g00798 | 639 | Coils | Coil | 129 | 167 | - | - | |
Cmo03g00798 | 639 | Gene3D | - | 54 | 124 | - | - | |
Cmo03g00798 | 639 | SUPERFAMILY | Protein kinase-like (PK-like) | 239 | 514 | IPR011009 | - | |
Cmo03g00798 | 639 | CDD | homeodomain | 61 | 117 | IPR001356 | GO:0003677 | |
Cmo03g00798 | 639 | SMART | serkin_6 | 246 | 511 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00798 | Cmo04g00828 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00798 | Cmo-Chr3:6497862 | Cmo07g00502 | Cmo-Chr7:2267677 | 0 | dispersed | |
Cmo03g00798 | Cmo-Chr3:6497862 | Cmo04g00828 | Cmo-Chr4:4132503 | 1.15E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9415 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-53 | CL0016 | Cmo | TF | |
74193 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-53 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00798 | - | - | cmo:103485027 | 586.26 |