Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00798 ATGGCCGCCGTCAATCTCCGACCCGACGACGACAACTCTACACTCATCTCCCACCTCTACAATCCTGAAATTTACACCCAAATGCTACCCCAACAAGGTACGGCAGAGGGAAACAAGCCGACGAAGCGACGGCGGAGGAGGAGCAGAGCGAAGGAGGTGGCCGAGGCCGCTGCCGGGTTGAAGAAGAGGAAGTTGAGTTCAGAGCAAGTGAAGCTTTTGGAAATGAACTTTGGAAACGAGCACAAATTGGAAACGGAGAGGAAAAATCGGTTGGCTTCAGAATTAGGCCTTGATCCAAGCCAAGTCGCCATCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACCAGAAACTGGAACACCAATATTCCATGCTCAAAAAAGCTCACGATTCTGCTGTTCTCCAAAAAACCCATCTTCAATCTGAGATAGAGAAACTGAAAGAGCAATTAGCGGAAGCGAAGAATGAGATACAGAAACTGGTGGAAGTAAGCGAGAGAAACCGTCGGTGGTCGGTGACGATGGATGACGTGCAAGCGGCGGCGTGTTGGGGAGAGATATTAATGGAAGAATATGAAGATGTATTCTATTCCATGCAGGAGAATAATTATAATGAACCAGTGGAGTGGACAATTTCCAGTGCTTTAAGTCCCTTCATTGGGGTTCATGATTCTGAAGATTTCGGTTCAGACTTCATCTTCAAGATCGAACCCAGTTTGCTCATTGACCCTCGTCGTTTGAAGATCGGCGAAGTTATTGGGGAAGGTTCATGCTCCATTGTCTATCAAGGACTGTACGATTGTCAACCTGTTGCCGTGAAGATTATACAGGCAAGCAGAACATCAGCTATAAGTCCTGAAAAGAAGGAGAGATTTCAAAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGCGCTTCCATAGAGCCGACATTGATGATAATCACTGAGCTTATGAAGGGTGGAACACTCCAGAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATTTGAAATTTTCCCTTAGTCTTGCTCTAGATCTGTCACGAGTAATGGCATACTTGCATGCAAATGGCATCATTCATCGCGATTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTAGCCGACTTTGGGTTGGCCAGGGAGGAAATATCTGGGGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCTCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTGTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCGAGTCTTGAGGACATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGTCTGAGGATCCCAATGGCCGTCCAGAATTCACACAAGTCATAGATTCTCTTTCTAATCTTCTTCAAACATTTGTGTTAAAAGAATCTTCACTTCCCAACATGGACGACAAAACAGAGAAGGAGGTGGATTGTGCATCAGACACTTCGGCTTCTCAGAGCAGGAGACAGCACAAGGCTAGAAGACATAGAAGCTCTTCATTCTGCCTCAAATTCTTCTTCGTCGGCAGAGGCGGTTTTAGTGGTGGCGCCACTCTTTTCTTCCGCCGTACACTGCATCTCTATGCTTCCCGTCGCCACCGCCAGCCGACAACAATCACACTCGCTCTCACACACATAAATCCACAATTCTCAGCCGTTGATCATCCAGTCAACAACCTACATATAGACACGCCTTCCACCTGGACTTCCACATCATTCCTCTTGAAGTTTTCTTGCGCCATGAAAGCAGGTTGGTCGTAG 1920 46.67 MAAVNLRPDDDNSTLISHLYNPEIYTQMLPQQGTAEGNKPTKRRRRRSRAKEVAEAAAGLKKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSMLKKAHDSAVLQKTHLQSEIEKLKEQLAEAKNEIQKLVEVSERNRRWSVTMDDVQAAACWGEILMEEYEDVFYSMQENNYNEPVEWTISSALSPFIGVHDSEDFGSDFIFKIEPSLLIDPRRLKIGEVIGEGSCSIVYQGLYDCQPVAVKIIQASRTSAISPEKKERFQREVMLLSRVNHENVIQFIGASIEPTLMIITELMKGGTLQKYLWSIRPETPDLKFSLSLALDLSRVMAYLHANGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEDIPEDIAPLLQSCWSEDPNGRPEFTQVIDSLSNLLQTFVLKESSLPNMDDKTEKEVDCASDTSASQSRRQHKARRHRSSSFCLKFFFVGRGGFSGGATLFFRRTLHLYASRRHRQPTTITLALTHINPQFSAVDHPVNNLHIDTPSTWTSTSFLLKFSCAMKAGWS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6497862 6505046 - CmoCh03G007980.1 Cmo03g00798 378261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00798 639 SUPERFAMILY Homeodomain-like 61 125 IPR009057 -
Cmo03g00798 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Cmo03g00798 639 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Cmo03g00798 639 Gene3D Transferase(Phosphotransferase) domain 1 327 555 - -
Cmo03g00798 639 Pfam Protein tyrosine and serine/threonine kinase 246 504 IPR001245 GO:0004672|GO:0006468
Cmo03g00798 639 CDD STKc_MAP3K-like 252 504 - -
Cmo03g00798 639 SMART HOX_1 59 120 IPR001356 GO:0003677
Cmo03g00798 639 PRINTS Tyrosine kinase catalytic domain signature 322 335 IPR001245 GO:0004672|GO:0006468
Cmo03g00798 639 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672|GO:0006468
Cmo03g00798 639 PRINTS Tyrosine kinase catalytic domain signature 360 378 IPR001245 GO:0004672|GO:0006468
Cmo03g00798 639 PRINTS Tyrosine kinase catalytic domain signature 433 455 IPR001245 GO:0004672|GO:0006468
Cmo03g00798 639 ProSiteProfiles Protein kinase domain profile. 246 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00798 639 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Cmo03g00798 639 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Cmo03g00798 639 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Cmo03g00798 639 MobiDBLite consensus disorder prediction 28 49 - -
Cmo03g00798 639 MobiDBLite consensus disorder prediction 523 545 - -
Cmo03g00798 639 Gene3D Phosphorylase Kinase; domain 1 235 326 - -
Cmo03g00798 639 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 222 538 - -
Cmo03g00798 639 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Cmo03g00798 639 PANTHER SERINE-THREONINE PROTEIN KINASE 222 538 - -
Cmo03g00798 639 Coils Coil 129 167 - -
Cmo03g00798 639 Gene3D - 54 124 - -
Cmo03g00798 639 SUPERFAMILY Protein kinase-like (PK-like) 239 514 IPR011009 -
Cmo03g00798 639 CDD homeodomain 61 117 IPR001356 GO:0003677
Cmo03g00798 639 SMART serkin_6 246 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00798 Cmo04g00828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00798 Cmo-Chr3:6497862 Cmo07g00502 Cmo-Chr7:2267677 0 dispersed
Cmo03g00798 Cmo-Chr3:6497862 Cmo04g00828 Cmo-Chr4:4132503 1.15E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9415 PF07714 PK_Tyr_Ser-Thr 2.40E-53 CL0016 Cmo TF
74193 PF07714 PK_Tyr_Ser-Thr 2.40E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00798 - - cmo:103485027 586.26