Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00828 ATGAACCAGCAAGAAAGTGAAGAGCGTGAAGCAGTACAAATCTGTGAGTTGTACACTCCATTATACATCCAAATGGTTCCCCAACAACAAGATAATAATTTGGGTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTAATTTTGGAAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTGGCGTCGGAGTTGGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTCAGATACTGAAGCTGAAAGAACAACTTTCAGAAGCGGAGAAAGAAAAGGAGAGGTTGATAATGGGAGAACGGGGCGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTGGACCCCACAGGCCTCGGGGAATTTGGAGCATCATTCGAAGATGTGTTTTACTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTACATTTGA 645 48.37 MNQQESEEREAVQICELYTPLYIQMVPQQQDNNLGEAKRRRRRKKNRGSEADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKLHESVVVEKCRLETQILKLKEQLSEAEKEKERLIMGERGDGPLSSSSPSPSMSMDAVDPTGLGEFGASFEDVFYYMPENSCIYGMEWPNPYI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4132503 4134035 + CmoCh04G008280.1 Cmo04g00828 379803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00828 214 Coils Coil 103 158 - -
Cmo04g00828 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cmo04g00828 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cmo04g00828 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cmo04g00828 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Cmo04g00828 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cmo04g00828 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cmo04g00828 214 Gene3D - 48 120 - -
Cmo04g00828 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Cmo04g00828 214 MobiDBLite consensus disorder prediction 158 179 - -
Cmo04g00828 214 MobiDBLite consensus disorder prediction 29 54 - -
Cmo04g00828 214 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cmo04g00828 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 11 213 - -
Cmo04g00828 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 213 IPR045224 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00798 Cmo04g00828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00828 Cmo-Chr4:4132503 Cmo04g02845 Cmo-Chr4:20319544 9.85E-27 dispersed
Cmo03g00798 Cmo-Chr3:6497862 Cmo04g00828 Cmo-Chr4:4132503 1.15E-48 wgd
Cmo04g00828 Cmo-Chr4:4132503 Cmo07g00502 Cmo-Chr7:2267677 2.52E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9567 PF00046 Homeodomain 6.60E-17 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00828 K09338 - csv:101221080 310.071