Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01645 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTCTCTGAGGAAATGCGGGATACTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCCCGCCTCGAAGCGGAATCTGTCACTCCCTCCTTCGTTCTGGGCCAGAACGACCCAGTTTGTGAGATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTAGTTTCTACTTTGAGTGAAACTGTAGTGGACGGCGTTCTTGAGAGTTTGAATATTCAGAATCCTGATGTTGCTGTGGCATTTTTCTATTTGTTGAGAAATAAGTACGGATTTCGGCATTCCGGATTCTCCCAGCTTGCCGTTTCTCATATTCTAGCGGGTAAAGGAAGATTCAAGGAGTTGCATTGCGTTATAAAGCAATTGGTTGAGGAGCAAGGGTCGGGTTCTGCATCTTCCTTTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGCGTATTCTAGACATGAAATGATCCATGATGCCCTCTTTGTCGTCGCAAAAATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTAAGGCACACTGATGTCATGTGGGATATATGCAATGAGATCAAAGCTAGTGGAGCTCCTCAGAGTGAATATACTACCTCAATACTTATACACGGCCTATGTGCGCAGTCCAAGTTACAAGATGCGATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCGTTATGTCAAAGTTTTGTAAAGTGGGGCTAGTAGATGTTGCAAGGTCATTTTTCTGTTTGATGGTCAAGAATGGACTTCTTCCTGATTCGTACAGTTATAATATTCTTATTCATGGGTTATGTGTAGCAGGTTCCATGGATGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAGCCTGATGTAGTAACATACAACACACTTGCTAAAGGTTTTCTCTTGCTTGGTTTTATGAGTGGGGCCTGGAAAGTCGTCCAGAAAATGTTGCTAAAAGGTCTAAATCCGGATATCGTGACATATACAATACTGATATGTGGGCACTGTCAAATGGGAAATATTGAGGAAGCCCTTAAGCTGCGGCAAGAAACCCTTTCAAGGGGGTTTCAGTTGAACATCATTTCTTACAGTGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGAATAGAAGAAGCATTGGCATTGCTCAATGAAATGGAAACTCTACGTTTGAAACCTGATCTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTACAAAGGGCTTACCAACTATATGAACAAATGCGTTTGAAGAGAAATTTTCCTAACTACTTTGCTCAACGTGCTGTACTTTTGGGTTTCTTTGAGAATGGAAATATTTCTGAGGCAAGAAGATATTTTGATGCTTTGACTCATATGGATCTGATAGAGGATATTATTTTGTATAATATTATGATTGATGGTTACGTAAGGCTTGGTGATATTTCTGAGGCTATGCAGCTATATTACAGAATGTTTGAAAGGGGGATTACTCCAACTGTTGTCACTTTCAACACTCTTGTCCATGGGTTTTGCAGAAATGGAGACCTAGTGGAGGCTCGAAAGATGTTCGAAATCATTAGGTTGAATGGATTGCTACCCAGTGTAGTAACTTATACTACCCTTATGAATGCGTACTGTGAAGCGGGAAACATGCAGGAAATGTTTGATCTACTCCATGAGATGGAAGCAAATGCTGTTGTTCCAACTCATATAACTTATACTGTACTAATCAAAGGACTCTGCAGACAGAATAAAATGCATGAAGCCCTCCAGTTACTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCAGATTACATATAATACTATTATCCAATGTTTTTGCAAGGCCAGAGACATTGCAAAAGCTTTCCAGGTTTATAATGAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAATGTACTTATTAGTGGTCTTTGTGTATATGGTGACCTAAAGGATGCTGATCGAATGCTGGTTTCTATGGAGGATCAAAATATTAGCTTGACAAAAGTTGCTTATATGACAATTATTAAGGCACATTGTGCAAAGGGTCAGGTGTCTAAGGCATTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTCATTTCCATCAGAGATTATAGTGCTATCATTAATAGGCTGTGCAAAAGGGGTCTAATTACTGAAGCAAAGTACTTATTTGCTATGATGTTATCTGAAGGTGTAACGCCTGATTCTGAAATCTGCGAGACAATGCTTAATGCTTTCCATCAACATGGTGATAGCAGTTCAGCATTTGAATTTCTTGCTGTGATGGTTAAATCTGGCGTCATTTCACATTGA 2502 39.85 MLSRIHQWKPLHSLRKCGILASFSSVILARPSVSAARLEAESVTPSFVLGQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDGVLESLNIQNPDVAVAFFYLLRNKYGFRHSGFSQLAVSHILAGKGRFKELHCVIKQLVEEQGSGSASSFCDLLLNKFRNWDSNGVVWDMLAFAYSRHEMIHDALFVVAKMKDLNLQASVPTYNSLLHNLRHTDVMWDICNEIKASGAPQSEYTTSILIHGLCAQSKLQDAISFLQDSNEVVGPSIVSINTVMSKFCKVGLVDVARSFFCLMVKNGLLPDSYSYNILIHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGFMSGAWKVVQKMLLKGLNPDIVTYTILICGHCQMGNIEEALKLRQETLSRGFQLNIISYSVLLSCLCKVGRIEEALALLNEMETLRLKPDLIVYSILIHGLCKEGFVQRAYQLYEQMRLKRNFPNYFAQRAVLLGFFENGNISEARRYFDALTHMDLIEDIILYNIMIDGYVRLGDISEAMQLYYRMFERGITPTVVTFNTLVHGFCRNGDLVEARKMFEIIRLNGLLPSVVTYTTLMNAYCEAGNMQEMFDLLHEMEANAVVPTHITYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDQITYNTIIQCFCKARDIAKAFQVYNEMLLHNLDPTHVTYNVLISGLCVYGDLKDADRMLVSMEDQNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYLFAMMLSEGVTPDSEICETMLNAFHQHGDSSSAFEFLAVMVKSGVISH 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8395312 8398989 - CmoCh04G016450.1 Cmo04g01645 380620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 798 832 IPR002885 -
Cmo04g01645 833 SUPERFAMILY TPR-like 343 512 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 409 497 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 78 220 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Cmo04g01645 833 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 17 831 - -
Cmo04g01645 833 Pfam PPR repeat 373 403 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 653 722 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 498 581 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 582 652 IPR011990 GO:0005515
Cmo04g01645 833 SUPERFAMILY HCP-like 494 688 - -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Cmo04g01645 833 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 17 831 - -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 723 832 IPR011990 GO:0005515
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 221 330 IPR011990 GO:0005515
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Cmo04g01645 833 Gene3D Tetratricopeptide repeat domain 331 408 IPR011990 GO:0005515
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 767 799 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 345 379 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 660 693 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 625 658 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 450 482 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 275 309 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 695 727 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Cmo04g01645 833 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 804 830 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 730 758 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat 767 795 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 657 705 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 587 636 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 272 320 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 413 461 IPR002885 -
Cmo04g01645 833 Pfam PPR repeat family 518 566 IPR002885 -
Cmo04g01645 833 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01645 Cmo-Chr4:8395312 Cmo11g00887 Cmo-Chr11:4542584 1.28E-88 dispersed
Cmo04g00287 Cmo-Chr4:1444475 Cmo04g01645 Cmo-Chr4:8395312 9.42E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01645 - - bhj:120081514 1490.32