Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02580 ATGAAGCATAATTCCAAGAATCAACCTCAGCTTTTCTGGCCAAGAGTGGTCCTGCGGAAATGGCTGAATATCAGTGCTAAAGAGTCGGATTACAGTGCCGATACCGAAGACGATGAGGATGTTAATTCGTCCGATTTTGAGACTGAAGAATGCAATAGGGGAAGAGAATCACGCTTTAAGGTAGACAACAGAGATGAACCACTGGTTGATGCTAATGATGGGCTGCCGAGGTTGAGAAGAAGAAATTCAGAAACATTTAGGATGCAATATATAAACGCGAAAGATCTCAGAATATGTGTTGCGACTTGGAATGTTGGAGGAAAACTACCTCCTGAAGATCTGGATATTGATGGCTGGATAGATACCAGTGAGCCAGCTGATATCTATGTCCTTGGTCTCCAGGAGATTGTACCATTGAATGCTGGAAATATATTTGGTGCTGAAGATAGTCGCCCAGTTGCTAGGTGGGAAGATATTATCCGTGAAACATTGAATAGAGTTAGACCTGCTACAACCAAGATTAAATGCTTTAGTGATCCACCGTCCCCATCAAAGTTTAAGCCATCTGATGACATCCCAGATTTAGAGGAGGAGATTCTGCAGGAAAGTGATAGTGATGTTGGTGTGGAAGTGCATCCATGTGATGAAGAATTCTATGGGAAGGAAAATGGCGATGGACTGGTAGCTGATAAAAATCTAAGCTGGAAGTTCCCAATTTCGGATCTTTCTGCAAATACCATACCAGAGATACCTGTAGAACAGGATTTAGTGAGGCAGTATTCTTCTCCAAAGAGATTGGATCGGTTAAATTGCTTCACAGAGAATGAGGAGGCTGTCTTTCAACAGAACAGAAGATTAACTAAAATGCTTAGTGGGACAGAAAGGATCGGTTTGAGTTGGCCTGAACCTCCACTACATTTACTTCCCCATCATGTTTCTGAGAGACCCAACTCTTTTAAATCAATGAATTCATTTAAAACAACCAAGTCCTTTAGGACATATAGTTCTTTCAAGTCAACCATGAATGAAATGCCGTCAGGGATTTCTTTGCTTGGAGAAATTGATCTTGAGTCTCTCCTAAAACAGAAGAGAAGATCGTCATATATTAGAATAGTAAGTAAACAAATGGTTGGTGTTTTCCTCACAGTATGGGTTCGTAGGAGTTTGCGAAGGCACATTCAGAATGTAAATGTTTCTACTGTTGGTGTTGGTGTAATGGGCTACATCGGTAACAAGGGATCCATATCTGTCAGCATGTCCATATACCAGACCCTATTTTGCTTTATATGCACACACCTTACATCAGGTGAGAAGGATGGAGATGAACTTAAACGAAATGCTGATGTGAGCGAAATACACCGAAGAACTCAATTCCATCCACTTAATGGTATTGGGTTAACTAAAGTTATCCACGATCACGAGCGGATAATCTGGTTGGGTGATTTAAATTATCGTATCAACTTGCCTTATGAGAAGACAAGAGATCTTATCTCGAGAAAAGAGTGGTCCAAATTGGCTGAGAGTGATCAGTTATCGAGGGAACTTAAGAAGGGTCGTGCATTTGATGGATGGACTGAGGGAAACCTTAATTTCCCACCAACCTATAAATACGAGATCAATTCAGAAAAGTATTACGGTGAGGATCCAAAAGTTGGACGGCGGACTCCAGCATGGTGTGACCGCATACTTTCATATGGAAAGGGATTGAAGCTGTGCAGTTATAGGAGGACTGAAATTAAATTTTCTGATCATAGACCAGTGACAGCCACCTACGTGGCCGAGGTCGAGGTCTTCTGTCCCCGTAAGCTACAACGAGCTCTAACATTCACAGACGCAGAGATCGAAAATGGGGAAGCAGCAATGGATGCCGAAAATTTTATCTGA 1884 41.77 MKHNSKNQPQLFWPRVVLRKWLNISAKESDYSADTEDDEDVNSSDFETEECNRGRESRFKVDNRDEPLVDANDGLPRLRRRNSETFRMQYINAKDLRICVATWNVGGKLPPEDLDIDGWIDTSEPADIYVLGLQEIVPLNAGNIFGAEDSRPVARWEDIIRETLNRVRPATTKIKCFSDPPSPSKFKPSDDIPDLEEEILQESDSDVGVEVHPCDEEFYGKENGDGLVADKNLSWKFPISDLSANTIPEIPVEQDLVRQYSSPKRLDRLNCFTENEEAVFQQNRRLTKMLSGTERIGLSWPEPPLHLLPHHVSERPNSFKSMNSFKTTKSFRTYSSFKSTMNEMPSGISLLGEIDLESLLKQKRRSSYIRIVSKQMVGVFLTVWVRRSLRRHIQNVNVSTVGVGVMGYIGNKGSISVSMSIYQTLFCFICTHLTSGEKDGDELKRNADVSEIHRRTQFHPLNGIGLTKVIHDHERIIWLGDLNYRINLPYEKTRDLISRKEWSKLAESDQLSRELKKGRAFDGWTEGNLNFPPTYKYEINSEKYYGEDPKVGRRTPAWCDRILSYGKGLKLCSYRRTEIKFSDHRPVTATYVAEVEVFCPRKLQRALTFTDAEIENGEAAMDAENFI 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18877131 18886260 - CmoCh04G025800.1 Cmo04g02580 381555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02580 627 Gene3D Endonuclease/exonuclease/phosphatase 268 625 IPR036691 -
Cmo04g02580 627 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 11 621 IPR045849 GO:0004445|GO:0046855
Cmo04g02580 627 SMART i5p_5 285 599 IPR000300 GO:0016791|GO:0046856
Cmo04g02580 627 SUPERFAMILY DNase I-like 87 609 IPR036691 -
Cmo04g02580 627 Gene3D Endonuclease/exonuclease/phosphatase 76 179 IPR036691 -
Cmo04g02580 627 MobiDBLite consensus disorder prediction 29 57 - -
Cmo04g02580 627 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 3 11 621 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02580 Cmo15g00580 CST
Cmo04g02580 Cmo15g00607 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02580 Cmo-Chr4:18877131 Cmo06g01398 Cmo-Chr6:10245452 2.64E-119 dispersed
Cmo16g01129 Cmo-Chr16:8035597 Cmo04g02580 Cmo-Chr4:18877131 2.14E-159 transposed
Cmo15g00580 Cmo-Chr15:2783779 Cmo04g02580 Cmo-Chr4:18877131 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02580 - - csv:101220281 1104.35