Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00125 ATGAAGTCGATGAACGAGAATGAGAATAATAATAATAATAATAATAATAACAACAACAGCAGCAGTTGGTTGGGATTCTCTCTTTCTCCCCACATGAAAATGGAGGTTACTGCCTCTGATCATCCCTACAATCATCACCATTCTCACTCTGCTACCAATGCCTTCTACTTGTCTCCTCATTACAACAATAACACTGAAATCTTTTATGGGATTGCTGAAAATGCTTCTCTTCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCGCTCAAATCCGATGGTTCACTCTGTATTATGGAAGCCCTTTCAAGATCACAAACCGAAGGGATGGTTCCGAGTTCTTCGCCGAAGCTAGAGGATTTTCTGGGCGGTGCAACAATGGGGGGTCGAGGTTATTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCGTTGGACCTTCTTCATAGACCCATTAGAGAAAATCAACAGCAGCAGATTTTGATGCAAAATACCCATCAATACTACTCAGGGCTGGTTCCGTCTTCCATTGGAATTGGAGGTTGCGATCCTCAAATTCTACCCGCTGACGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTATGCCGGCGCCCATAATAATCTGGACCAACAAATTACTGGAGGCGGCGGAGGCGCTCTCGTACATGACGGCGGCAGTGGCGGTAACTCTGTCTCCATTGGTGGAATGAGCTGTGGGGAATTGCAGTCGTTGAGCTTGTCGATGAGCCCAGGTTCTCAATCGAGCTCATTCACGGCTTCTGGCCAGATCTCCCTTACTGGAGGCGACGGCGCCGTCGTAGAAACTAAAAAACGAGGCCCTGGAAAACTCTGCCAGAAGCAGCCCGTTCACCGCAAGTCCATCGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACAAGGTTCCATTACCTCATTATTCATCTTTTAAATCCCATTCTAATACAATACAACTTTTTTCAAGCTTTGTTCCTTTTGGTTTGGAAATACCTCAGACACAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGTGTTTGTACCAAGAAAAACAAAAAACCCCATTTTTTTAATTTCAAGTTTTCATGTTCTTTTCTCATAAGCTTCCATTTTGGATTGACCATTTTACATTCTTTCTTGTCGTGGTCTGTTCTTGACGGGAATGCCATTTCACATTTCACCATTACAGTTTATCTTGCTAAACTTTATGTTTATTACTCAAAATTTGAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACGCATATTAACTTTCCTTTGGAGAATTATCAGACTGAACTGGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCAGTTTTCCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAGGCGAGGATTGGGAGAGTTGCTGGAAACAAAGATCTTTACCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTACGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCGAGATATGACGTCGAGAGAATCATGGCCAGCAATACCCTACTGGCTGGCGAGCTTGCCAGAAGGAACAAGGAGGTGGTCGTCGACCCAAGGACTGATGCTGCTGCTGCTGCCGTTGCCTACGATTCCTCTGTTGCATCTAACAATAATGGCGGGATTGAAATGAATCCAGACGGAAATGGTACGGATTGGAAGATGGCATTGTATCAGAATCCTTCTCATCAACAACACCAACAGGGAGCTGCTACTTGTGTTGCTGAATCACTAGATCACCATCATAATAAGTCGATGGCCTCGTCGGGAGACTATCCGAATGCTTCGTTTTCGATGGCATTGCAGAACTTGATCGGTATCGAAGCGTTGAACACTACTAACAGTCATGGAATTGAAGATGATTTGAACAAACAAGTAACGCATTTTTCAAATTCGTCGTCGCTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGCCCTGACAAGGCGAATGCGTCAATGGCGTCGAAGCTAATTGGTGCAACAAGCGGGGTGGGGTCTTGGTACCCAACCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTGA 2313 45.78 MKSMNENENNNNNNNNNNNSSSWLGFSLSPHMKMEVTASDHPYNHHHSHSATNAFYLSPHYNNNTEIFYGIAENASLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGGRGYFNQNAESEPDREHSLDLLHRPIRENQQQQILMQNTHQYYSGLVPSSIGIGGCDPQILPADDDEIPCLRNWVSRSHYAGAHNNLDQQITGGGGGALVHDGGSGGNSVSIGGMSCGELQSLSLSMSPGSQSSSFTASGQISLTGGDGAVVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRFHYLIIHLLNPILIQYNFFQALFLLVWKYLRHRWTGRYEAHLWDNSCKKEGQTRKGRQGVCTKKNKKPHFFNFKFSCSFLISFHFGLTILHSFLSWSVLDGNAISHFTITVYLAKLYVYYSKFEGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKEVVVDPRTDAAAAAVAYDSSVASNNNGGIEMNPDGNGTDWKMALYQNPSHQQHQQGAATCVAESLDHHHNKSMASSGDYPNASFSMALQNLIGIEALNTTNSHGIEDDLNKQVTHFSNSSSLVTSLSSSREGSPDKANASMASKLIGATSGVGSWYPTPQQLRPTAISMAHLPVFAAWNDT 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 542544 546313 - CmoCh05G001250.1 Cmo05g00125 382260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00125 770 CDD AP2 505 566 IPR001471 GO:0003700|GO:0006355
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 347 374 - -
Cmo05g00125 770 SUPERFAMILY DNA-binding domain 505 566 IPR016177 GO:0003677
Cmo05g00125 770 Gene3D AP2/ERF domain 342 472 IPR036955 GO:0003700|GO:0006355
Cmo05g00125 770 Pfam AP2 domain 505 556 IPR001471 GO:0003700|GO:0006355
Cmo05g00125 770 Gene3D AP2/ERF domain 506 566 IPR036955 GO:0003700|GO:0006355
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 439 768 - -
Cmo05g00125 770 MobiDBLite consensus disorder prediction 1 24 - -
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 347 374 - -
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 318 - -
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 318 - -
Cmo05g00125 770 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 439 768 - -
Cmo05g00125 770 ProSiteProfiles AP2/ERF domain profile. 310 470 IPR001471 GO:0003700|GO:0006355
Cmo05g00125 770 ProSiteProfiles AP2/ERF domain profile. 506 564 IPR001471 GO:0003700|GO:0006355
Cmo05g00125 770 SUPERFAMILY DNA-binding domain 439 472 IPR016177 GO:0003677
Cmo05g00125 770 SMART rav1_2 344 476 IPR001471 GO:0003700|GO:0006355
Cmo05g00125 770 SMART rav1_2 506 570 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01825 Cmo05g00125 CCT
Cmo05g00125 Cmo09g00310 CCT
Cmo05g00125 Cmo12g00550 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00125 Cmo-Chr5:542544 Cmo05g00837 Cmo-Chr5:5236754 5.12E-89 dispersed
Cmo01g00043 Cmo-Chr1:133673 Cmo05g00125 Cmo-Chr5:542544 2.22E-88 transposed
Cmo01g01825 Cmo-Chr1:13364902 Cmo05g00125 Cmo-Chr5:542544 1.87E-114 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo05g00125 Cmo-Chr5:542544 5.71E-07 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo05g00125 Cmo-Chr5:542544 2.99E-147 wgd
Cmo05g00125 Cmo-Chr5:542544 Cmo07g00637 Cmo-Chr7:2876799 2.79E-164 wgd
Cmo05g00125 Cmo-Chr5:542544 Cmo09g00310 Cmo-Chr9:1336180 7.29E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9776 PF00847 AP2 1.10E-09 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00125 K09285 - csv:101212797 531.946