Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00254 ATGGATATCAGAGAGCAGGAGAAGGAAGTAATAATACCTGCGGCTTCCGTCGGTGGTGGTTACGCTCATATTTTTGGGGAAACCTCGTCCGGAGGAGTCGTCGACCGGAGAATAGAGTCGATTCATAATGGCTCTCATCACCATATCCAAACCGACCTCCACGATGCCGACTGTGTTGCGGCTACTACAGAGAACATTGGCAACGGCGGCGGCGGCGGCGGAGGTAGCGGCGGAGTTAGCGGCGGAGGCGGAGGCGGAGGAGGAGGAGGAGGTAGTTTTTCATCTGGCGGTAGATCCAAGGCGCGGGGGGCGGGTGCTGGAGTTAGGTATAGAGAATGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGATGGATGCGGAGAGTTTATGCCAAGCGGAGAAGACGGAACCCTAGAGGCTCTAAAATGCGCCGCTTGTGAATGTCATCGGAACTTCCACCGGAAAGAAATCCACGGCGAGAGTCAATTAAACATCAGTCCTAATTACAGAAGAGGACTAATGCTCAACCATCTCCAACTTCCTGCGCCATTGCCGTCCCCTTCCGCTCTCCACGGCCACCATAAATTCTCCATGGCATTGAACCTCCATTCCAGTCCTAATGCTCCAATCATCGCTCCAATGAACGTCGCCTACGGCGGTGGTGGCGGAACCGAGTCCTCCAGCGAGGATTTGAACGTTTTCCATTCGAATGCCGAGGTGATGCCGCCGTCTTCGTTCTCCCTCAAAAAGCGGTACCGTACAAAGTTCACACAAGAACAAAAGGATCGGATGCTGGAGTTCGCCGAGAGAGTCGGATGGAGGATTCAAAAGCAAGACGAAGAAGACGTCGAACGATTCTGTAGCGATGTGGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAAAACACAGTGAAGAAGCCGAACGAAAATCACGAACCTGAACCCGCCGCCGTCGCCGCCGCCGTCGCCGTCGACGTCGGCACCTGCACCGTCGTCACAAGTGAATCGTAA 1032 54.07 MDIREQEKEVIIPAASVGGGYAHIFGETSSGGVVDRRIESIHNGSHHHIQTDLHDADCVAATTENIGNGGGGGGGSGGVSGGGGGGGGGGGSFSSGGRSKARGAGAGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIHGESQLNISPNYRRGLMLNHLQLPAPLPSPSALHGHHKFSMALNLHSSPNAPIIAPMNVAYGGGGGTESSSEDLNVFHSNAEVMPPSSFSLKKRYRTKFTQEQKDRMLEFAERVGWRIQKQDEEDVERFCSDVGVKRQVLKVWMHNNKNTVKKPNENHEPEPAAVAAAVAVDVGTCTVVTSES 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1089513 1090544 + CmoCh05G002540.1 Cmo05g00254 382389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00254 343 MobiDBLite consensus disorder prediction 67 101 - -
Cmo05g00254 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 100 315 - -
Cmo05g00254 343 Pfam ZF-HD protein dimerisation region 108 160 IPR006456 -
Cmo05g00254 343 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 109 160 IPR006456 -
Cmo05g00254 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 110 159 IPR006456 -
Cmo05g00254 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 100 315 - -
Cmo05g00254 343 Gene3D - 240 313 - -
Cmo05g00254 343 SUPERFAMILY Homeodomain-like 245 313 IPR009057 -
Cmo05g00254 343 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 252 309 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00254 Cmo12g00418 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00772 Cmo-Chr3:6406729 Cmo05g00254 Cmo-Chr5:1089513 4.00E-62 dispersed
Cmo05g00254 Cmo-Chr5:1089513 Cmo07g00483 Cmo-Chr7:2202787 9.94E-68 dispersed
Cmo12g00418 Cmo-Chr12:2570610 Cmo05g00254 Cmo-Chr5:1089513 1.32E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9793 PF04770 ZF-HD_dimer 1.50E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00254 - - cmax:111492398 578.556