Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00427 ATGGGTCCAGCAGTTCTGAGTTCACACACCAATGGCTTCTCCAAATCAGTAGATCGAAACTTCGAAGAGAAAAACAATTACATCAATGGAGATTCTTCTCATGAATCGGTAATCAATACTGTTAATGGCAACGATTGCTATTGGTTCGAGGAAATCATCGACGAAAATCTCAAATGGTCTTTTGCTCTGAATAGCGTTCTGCAGAAAGGAACCAGCGAGTTTCAGGATATTGCGCTATTAGATACCAAGTGTTTCGGAAAAGCTTTGATGATCGACGGGAAGATGCAGAGCGCTGAAGCCGATGAATTCGTGTATCATGAATGCTTGATTCATCCCGCGCTATTATGCCATTCCAACCCGAAAACTGTATTCATAATGGGAGGTGGGGAAGGATCAGCAGCCAGAGAAGTCCTCAAACACAAATCAATAGAAAAAGTTGTCATGTGCGATATTGATCAGGATGTAGTGGATTTCTGCCGTAAATATTTGACTGTGAACCAGGAGACATTTTGTCACAAAAAACTTCATCTTGTAATAAACGACGCCAAGGCGGAATTGGAAAAGAGAAAGGAGAAATATGATATAATTATAGGAGACCTAGCAGACCCTGTTAAAGATGGGCCTTGCTACAAGCTCTACACCAAATCCTTCTACCAGGAGATCGTCAAGCCAAAGCTCCACGACAATGGCATCTTCGTAACTCAGGCAGGACCAGCCGGAATTTTCACCCACAAAGAGGTTTTTACCTCCATATATAACACAATCAAACAGACATTCAACTATGTGATTGCTTACACGGCTTACATACCATCTTTTGCTGACACATGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGAATTGGATAAGAGAATTGAAGATAGAATCGATGGGGAGTTGCTCTATTTAACTGGTCCTTCCATTGTGTCCTCCACCATTATCAACAAGATGGTTTCTTTAGCGTTGTTGAACGAAACTCATATCTATACTGAAGCGACTGCAAAATTCATACATGGTCAAGGAGTTGGATTCAAGCAACAGAATGGCAGGAGTTGTCGTGGTGTATAA 1083 41.55 MGPAVLSSHTNGFSKSVDRNFEEKNNYINGDSSHESVINTVNGNDCYWFEEIIDENLKWSFALNSVLQKGTSEFQDIALLDTKCFGKALMIDGKMQSAEADEFVYHECLIHPALLCHSNPKTVFIMGGGEGSAAREVLKHKSIEKVVMCDIDQDVVDFCRKYLTVNQETFCHKKLHLVINDAKAELEKRKEKYDIIIGDLADPVKDGPCYKLYTKSFYQEIVKPKLHDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEELDKRIEDRIDGELLYLTGPSIVSSTIINKMVSLALLNETHIYTEATAKFIHGQGVGFKQQNGRSCRGV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1987749 1991197 + CmoCh05G004270.1 Cmo05g00427 382562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00427 360 Pfam Spermidine synthase tetramerisation domain 47 99 IPR035246 -
Cmo05g00427 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 316 IPR029063 -
Cmo05g00427 360 Pfam Spermine/spermidine synthase domain 102 282 - -
Cmo05g00427 360 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 38 350 - -
Cmo05g00427 360 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 283 IPR030374 -
Cmo05g00427 360 Hamap Polyamine aminopropyltransferase [speE]. 47 319 IPR001045 GO:0003824
Cmo05g00427 360 Gene3D Vaccinia Virus protein VP39 99 351 IPR029063 -
Cmo05g00427 360 PANTHER BNAA02G04280D PROTEIN 38 350 - -
Cmo05g00427 360 CDD AdoMet_MTases 127 235 - -
Cmo05g00427 360 Gene3D Spermidine synthase, tetramerisation domain 47 98 IPR037163 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00427 Cmo12g00250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00427 Cmo-Chr5:1987749 Cmo06g01418 Cmo-Chr6:10321581 3.59E-160 dispersed
Cmo05g00427 Cmo-Chr5:1987749 Cmo04g01804 Cmo-Chr4:9088749 5.73E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00427 K18787 - csv:101210030 640.573