Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01102 ATGGCGTCGAGGAATCGGACTTTGATTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCGGCTCTTCGCCTGCTTCTGCATCTCCATCGACTAGCTCTGGCACTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCGTACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGAGCACGAGTAAAGATGATGGAGTTAGCTAAAGCTCATGCAAAAGCTTTAATGCCTTCATTTGGAGATGATAAAGAAGATCAACGGTTAATTGAATCTCTCACGCAAGACATAACTAACTTAATCAAGAAATCGGAGAAGGGGCTCAAGAGATTTTCCGTAGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAACAGGTCGAGAATGGAGGAGGACGATGATTTAGAAGACATGGTATTTAACGAGCATCAGATGGCTAAGGTGCGAAAGACTGAAGCATTCACTGCAGAAAGAGAGAGAGAGATCCAACAAGTAGTAGAATCCGTGAACGAGCTCGCTCAGATCATGAAGGATCTATCAGTACTAGTCATAGACCAGGTTAGAGAAGGTGCCCATCCTACGACCTGCGGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTAATCCTTAA 924 46.1 MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDDKEDQRLIESLTQDITNLIKKSEKGLKRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEEDDDLEDMVFNEHQMAKVRKTEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQVREGAHPTTCGENTETRGDGNVRVRAHYHVLRHVGSLNP 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8787283 8791425 - CmoCh05G011020.1 Cmo05g01102 383237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01102 307 MobiDBLite consensus disorder prediction 21 44 - -
Cmo05g01102 307 Gene3D - 79 280 - -
Cmo05g01102 307 SUPERFAMILY t-snare proteins 77 268 IPR010989 GO:0016020|GO:0016192
Cmo05g01102 307 SMART SynN_4 73 188 IPR006011 GO:0016020
Cmo05g01102 307 MobiDBLite consensus disorder prediction 23 44 - -
Cmo05g01102 307 PANTHER SYNTAXIN-43-LIKE 1 268 - -
Cmo05g01102 307 PANTHER SYNTAXIN 1 268 IPR045242 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01102 Cmo12g01056 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01102 Cmo-Chr5:8787283 Cmo17g01031 Cmo-Chr17:8784234 1.41E-100 dispersed
Cmo12g01056 Cmo-Chr12:9759088 Cmo05g01102 Cmo-Chr5:8787283 3.98E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01102 K08489 - csv:101207998 464.151