Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01354 ATGACTTATAAGGAAAGACTTCCTTGGTACATCCTGAAGCTCCCCAAAAGCATGGAGAATTTGGATAATGTCGGGACGATCGTTCCGATACCCTTCTCGAGGAATGTTGTGTTGGAGAGTTCAGAGGTCGGAATCGTCATTCCGACGTCGTTCTTGAAGAATGTCGGATCTGTTAATGATTTAAATTTGATGGGGGAAGAAGATTCCGTAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGACAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGCAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCAGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGTTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCCACAGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACTGATAAAACAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCCCAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGCGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCCACAAATTCTAGAACTGAAACTCAGAGTAATATTGGTCAACTCAACAATAAAGTTACAAAATCTTCGATTCCACCGTCGGTGAAGACGTCGCAGACGGTAACTACAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1959 45.99 MTYKERLPWYILKLPKSMENLDNVGTIVPIPFSRNVVLESSEVGIVIPTSFLKNVGSVNDLNLMGEEDSVGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSRTETQSNIGQLNNKVTKSSIPPSVKTSQTVTTAVMTLSNDQRQKVLPLS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10498359 10503985 - CmoCh05G013540.1 Cmo05g01354 383489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01354 652 MobiDBLite consensus disorder prediction 481 495 - -
Cmo05g01354 652 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 182 217 IPR005172 -
Cmo05g01354 652 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 268 302 IPR005172 -
Cmo05g01354 652 PANTHER TESMIN/TSO1-RELATED 117 639 IPR028307 -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 464 480 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 79 95 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 68 182 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 437 511 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 437 463 - -
Cmo05g01354 652 ProSiteProfiles CRC domain profile. 181 305 IPR005172 -
Cmo05g01354 652 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 117 639 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 107 128 - -
Cmo05g01354 652 SMART CXC_2 265 306 IPR033467 -
Cmo05g01354 652 SMART CXC_2 180 220 IPR033467 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01354 Cmo12g01288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01354 Cmo-Chr5:10498359 Cmo17g00212 Cmo-Chr17:1245799 1.38E-33 dispersed
Cmo10g00669 Cmo-Chr10:3059747 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo05g01354 Cmo-Chr5:10498359 4.09E-171 wgd
Cmo12g01288 Cmo-Chr12:11365188 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9872 PF03638 TCR 3.50E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01354 - - csv:101211978 1044.65