Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00662 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACCTCAGCCACAATCTACTCCACCCAATAGAATGATGGGAAATGCTTCTTATTCCACCAATTTCCCCAACAACAACAACAATGCTTCCCCATTGATCAACCCCAATTCCACCGCTGCTCAGATGATGTCATCCGCATCGCGATTTCCCTTTAACTCCATGATGGGTTCTGCTTCTAAGCCTTCGGACTCGCCTAATGCCGGTTCTTATGACGGATCGCAGTCCGAATTGCGTGGTGGTGGCTTCAACATTGATTCCGGGAAGAAGAAGAGAGGCCGTCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGTTTATCGCCAACCCCCGTCACTTCTTCCGCCGCTCCCGGTGATTCTGCTGGCATGCACTCGGCGGATCCTCGCCCGAAAAAGAACAGGGGACGGCCGCCGGGTACTGGGAAGAAGCAGATGGATGCTTTGGGAACCGGCGGTGTTGGCTTTACCCCTCATGTCATTCTGGTGAAACCCGGAGAGGACATTGCTTCGAAAGTTGTGGCATTTTCACAGCAGGGGCCTCGGACTGTTTGTGTTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACCCTTCACCAACCCACAATGGCAGCTGGCAGTGTGACATATGAGGGCCGATATGAAATCATCTCTCTATCAGGCAACTTCTTGATTTCTGACAGTAACGGCAATCGAAATCGAACTGGTCGCTTAAGCGTGTCTCTAGCAAGTGCGGATGGACAAGTCCTTGGTGGAATTACCGACATGTTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGACTCAAGTACACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTCAGTACACCTGCGGCGGCAACAGGCTGCCCCTCTGAAGGTGCATCAAATAACTCATCAGATGACAATGATGGTAGCCCTTTAAGCCGGGCGCCTGGACTCTACACCAATGCCAGCCAACCAATTCATAATATGCAGATGTATCAATTGTGGGGTAGTCGAAATCAATAA 1092 50.18 MDSRERSMPSVHQPQPQSTPPNRMMGNASYSTNFPNNNNNASPLINPNSTAAQMMSSASRFPFNSMMGSASKPSDSPNAGSYDGSQSELRGGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPVTSSAAPGDSAGMHSADPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVVAFSQQGPRTVCVLSAHGAVCNVTLHQPTMAAGSVTYEGRYEIISLSGNFLISDSNGNRNRTGRLSVSLASADGQVLGGITDMLTAASTVQVIVGSFLVDGKKLDSSTQKSGPSSTSPNMLNFSTPAAATGCPSEGASNNSSDDNDGSPLSRAPGLYTNASQPIHNMQMYQLWGSRNQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3334907 3343642 + CmoCh06G006620.1 Cmo06g00662 384224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00662 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 359 IPR039605 GO:0003680
Cmo06g00662 363 MobiDBLite consensus disorder prediction 288 345 - -
Cmo06g00662 363 CDD DUF296 169 282 IPR005175 -
Cmo06g00662 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 359 - -
Cmo06g00662 363 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cmo06g00662 363 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Cmo06g00662 363 Gene3D - 170 297 - -
Cmo06g00662 363 MobiDBLite consensus disorder prediction 8 85 - -
Cmo06g00662 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 282 IPR005175 -
Cmo06g00662 363 ProSiteProfiles PPC domain profile profile. 164 304 IPR005175 -
Cmo06g00662 363 MobiDBLite consensus disorder prediction 1 162 - -
Cmo06g00662 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 283 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00662 Cmo19g00256 CCT
Cmo06g00662 Cmo16g01203 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02098 Cmo-Chr1:14534772 Cmo06g00662 Cmo-Chr6:3334907 3.94E-71 dispersed
Cmo06g00662 Cmo-Chr6:3334907 Cmo17g00404 Cmo-Chr17:2679899 2.94E-59 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo06g00662 Cmo-Chr6:3334907 0 wgd
Cmo19g00256 Cmo-Chr19:1864916 Cmo06g00662 Cmo-Chr6:3334907 2.99E-88 wgd
Cmo02g01652 Cmo-Chr2:9527908 Cmo06g00662 Cmo-Chr6:3334907 9.71E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00662 - - cmax:111498434 669.848