Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00719 ATGGGGAGGACTGATGATAACGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGTACACGAGCCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTATCACCATTGATAAAACTGAAGAGCTATTTCAAAGGCCTCGAGAACATCCGGTATCGAACAACACCGTTGCAAGAGGCGGGATCCCAAGTGCCAATTCTGGTGATCGGTCGATGGATTTAAGTTCGTTTTCGGGGCAGAAATTCTGTGGGGGTCTTGTCGAAAGGATTGCTGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGTATTAGATCCACTGATCAATCTCTGGATTCAGATGCCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCTACTACATTGCTAGATTCACCTGTTTTTCTTTCTAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCGTTCTTGCCGAATGTTAGTAATCGGAGCTCAATGATGATGTCGGAGGGCGACGATAAAGGCAGCGTCAATCCATTCAACAATAACAGTACATCGTTTGCATTCAGTTCTGGTGTGGAATCTGGATCGTTCTTTTATCTCGGTGCAGCAAGCAAAACAGATTCTGCCACTGTTCTTCCACAATCTTGTCCGAGAATTGAGGTTTCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATATTGTAGAACCATCTCTGTCTTTACCTCAAAACAGAATCAGTCATCATCCGCAAGTGGGACTCTCTACGTCATGCGTCGAGAGAGATGATGTGGGTAAGACCGTGTCAGATGATCAAAGAACCTTTGATTCTTTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCCATGGCTGGTGGTGGTAGTGGCGCCCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTACCCTCGTAGTTATTATAAGTGCACGCATCCAAACTGTCAGGTCAAGAAAAAAGTCGAGCGATCTAATGAGGGTCATATAACAGAGATCATCTATAAAGGAACACATAATCACCCAAAGCCCTCGCCCTATCGACGAGCAGCGACCGGACCTTCGGATTCCCATATCAATATGCAACTAGACATTTCTGCACAAGGTGGCCAACAGACTGCTGAAGGTCTCCTTTGGGGAGATTCACAAAAACGGATTCCAAATGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAATACTTCACAGGCTCAAAATGGCAGTCATGTTGAAACAGTTGAAGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGCACCCATGGCAGTGTAACATTGGGATATGAGGGGGAAGGAGATGAGTCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACGGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTCGTGCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGCTGGCGCAAATACGGGCAGAAGGTACATCAAATTTCCATGTTTGTGTGTGGTATCATCCTGTCACCAGTTTGTGATGGTGTGTACCAACTGCTTGTGTACAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATCACGACATACGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTAGTACATCCAGTCCAGTAACCACACAAAACTCGACCGCAACGACTCAAACTCATATTCACAGACCGGGGCCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCAGTGTTTAGCCTTCCTGGAAGACAGCAGATGGGCAGTGCCCATGGGTTCTCTTTTGGAATGAACCCACCTGGACTGAGAAATCTGACAATGGCAGCCGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGACATGGGTTTCTTGTTGCCAAAAGGAGAGCCCAATGTAGAACCTACATCTGACCTTGGCTTGAACTTTTCCCATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATATTTACTCACCATATAGTTTACCTCTTCGCTGAAGAACAACCAGAGGGTTAA 2325 46.62 MGRTDDNVAIIGDWVPPSPSTRAFFSAMLGEDVGSRPAMDTITIDKTEELFQRPREHPVSNNTVARGGIPSANSGDRSMDLSSFSGQKFCGGLVERIAARAGFNAPRLNTESIRSTDQSLDSDAKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSSMMMSEGDDKGSVNPFNNNSTSFAFSSGVESGSFFYLGAASKTDSATVLPQSCPRIEVSVPRSENSFQSHIVEPSLSLPQNRISHHPQVGLSTSCVERDDVGKTVSDDQRTFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGSGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSNEGHITEIIYKGTHNHPKPSPYRRAATGPSDSHINMQLDISAQGGQQTAEGLLWGDSQKRIPNGAPDWMHENLEVTSSASLGPEYGNQPNTSQAQNGSHVETVEAIDASSTFSNDEDEDDRGTHGSVTLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVHQISMFVCGIILSPVCDGVYQLLVYRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSSTSSPVTTQNSTATTQTHIHRPGPPQPQNTIPRFERPVFSLPGRQQMGSAHGFSFGMNPPGLRNLTMAAVGQAKLPVLPMHPYLAQAHHVNDMGFLLPKGEPNVEPTSDLGLNFSHGSTVYQQIMSRLPLGPEIFTHHIVYLFAEEQPEG 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3663619 3668028 + CmoCh06G007190.1 Cmo06g00719 384281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00719 774 MobiDBLite consensus disorder prediction 606 656 - -
Cmo06g00719 774 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 Pfam WRKY DNA -binding domain 574 611 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 SUPERFAMILY WRKY DNA-binding domain 320 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 58 79 - -
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 549 IPR044810 GO:0003700
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 575 710 IPR044810 GO:0003700
Cmo06g00719 774 ProSiteProfiles WRKY domain profile. 531 614 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 107 549 - -
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 575 710 - -
Cmo06g00719 774 MobiDBLite consensus disorder prediction 616 648 - -
Cmo06g00719 774 Gene3D WRKY domain 521 615 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 Gene3D WRKY domain 315 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 471 504 - -
Cmo06g00719 774 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 SMART WRKY_cls 536 613 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 275 327 - -
Cmo06g00719 774 SUPERFAMILY WRKY DNA-binding domain 528 614 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00719 Cmo16g00982 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00719 Cmo-Chr6:3663619 Cmo10g00863 Cmo-Chr10:4088255 6.02E-99 dispersed
Cmo16g01037 Cmo-Chr16:7226008 Cmo06g00719 Cmo-Chr6:3663619 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9956 PF03106 WRKY 6.00E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00719 K18835 - csv:101207853 1170.61