Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01129 ATGCGTGATTCAATCCCACTGTACTCTTCTCCCATCCGGACGGTGGATAATTCGCCTCTGCTTGGCTATTCCGTCGCCGATGGATTCTTCCGATCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCTCTTCGTGGCGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCAAGAGCCCTCCGTTCGTGTTCGTGAAACCGCCGCCGAGCAGCTGGAGGAACGGCAGAGCGATTGGGCGTACTCGAAGCCGATAATCCTCTTGGACCTTCTATGGAACTTGGTTTTCGTCGCCATTAGTTTCACTATCCTAGGGCTCAGCACGAGCGAAAATCCTTCTGTGCCGCTTAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCAGCTGAGTATAAGCGGCGGCACTTGACGAGAGAGCCCGCCGGATTGGACCGTGGCAGCGACTGGATGAGCGGCGATGACTCGAATTCCGCCTCTGGAAGTGATGGAGATGAAGAGCTTACCGTGAATGAAGAAGAACCAAGCAATCTTGTGAAGCATATTGAATCTGCAAATACCTTGTTCTCTTTCATCTGGTGGCTGCTAGGATTTTACTGGGTCACTACTGGAGGCCAAGAATTGATAGATGATTCACCTCAGCTATACTGGTTTTTCCATGGTCTACATTGCAGGCTTTGTATTACATTCCTTGCTTTCGACGTCGTGTTTGTTCTGATTTGCGTCGCAATTGCCTGTCTTGTTGGTGTTGCTATTTGCTGCTGTCTTCCTTGCATAATTGCTATCTTGTATGCGGTTACCGATCAGGTAGATTCAATGAGCTTTTGTTCAATTTCGTGGGTCGATATTTTAATCCCTTCTAGCGGCCGGTCATGTTTGATCAGTATAACGCAACCATATAGGTTCTATTGTAGTTATTATCGACTTATGCTAGAGCGTGACAATGTTGTCAAGAACGGAGAATGTTCCTCGACTTTTGAGTTTGTGATGATACTTATACTGTTGCTACTGTCAACTCACCGTGATTCGTTTCTAACCCGCAAAATTCAGGAAGGAGCAACGAAGGAGGAGATCGATCGCTTACCGAAGTACATATTCAACAGAACATGTGATGTTGAGAAAGGGATTGGTGATACTCAAGAATCTACTGGAGGAATAATGACTAAATGTGACACTGATGCACCTACCAAGCATTTTCTTCGTCCCGAAGATTCTGAGTGTAGCATCTGCCTCAGCGCTTACGAAAACGAAACGGAGCTACGAGAGCTGCCCTGTAACCACCATTTCCACTGCAACTGCATCGACAAATGGCTACACATCAATGCAACCTGCCCGCTCTGCAAGTTCAACATATTGAAGCCGAACGGTTCCAGTAGCGAAGAAGTGTGA 1416 47.53 MRDSIPLYSSPIRTVDNSPLLGYSVADGFFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLQEPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLVFVAISFTILGLSTSENPSVPLRFWIIGYALQCIIHMSCVAAEYKRRHLTREPAGLDRGSDWMSGDDSNSASGSDGDEELTVNEEEPSNLVKHIESANTLFSFIWWLLGFYWVTTGGQELIDDSPQLYWFFHGLHCRLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQVDSMSFCSISWVDILIPSSGRSCLISITQPYRFYCSYYRLMLERDNVVKNGECSSTFEFVMILILLLLSTHRDSFLTRKIQEGATKEEIDRLPKYIFNRTCDVEKGIGDTQESTGGIMTKCDTDAPTKHFLRPEDSECSICLSAYENETELRELPCNHHFHCNCIDKWLHINATCPLCKFNILKPNGSSSEEV 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8677999 8680953 - CmoCh06G011290.1 Cmo06g01129 384691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01129 471 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 359 467 - -
Cmo06g01129 471 SMART ring_2 416 456 IPR001841 -
Cmo06g01129 471 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 279 - -
Cmo06g01129 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 464 IPR013083 -
Cmo06g01129 471 SUPERFAMILY RING/U-box 407 463 - -
Cmo06g01129 471 PANTHER TARGET OF ERK KINASE MPK-1 359 467 - -
Cmo06g01129 471 MobiDBLite consensus disorder prediction 154 180 - -
Cmo06g01129 471 Pfam Ring finger domain 415 457 IPR001841 -
Cmo06g01129 471 PANTHER TARGET OF ERK KINASE MPK-1 29 279 - -
Cmo06g01129 471 MobiDBLite consensus disorder prediction 160 174 - -
Cmo06g01129 471 CDD RING-H2_RNF111_like 415 459 - -
Cmo06g01129 471 ProSiteProfiles Zinc finger RING-type profile. 416 457 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01129 Cmo14g02075 CST
Cmo06g01129 Cmo16g01058 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01129 Cmo-Chr6:8677999 Cmo16g01058 Cmo-Chr16:7427147 5.07E-43 dispersed
Cmo14g02075 Cmo-Chr14:15111582 Cmo06g01129 Cmo-Chr6:8677999 3.56E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01129 - - cpep:111786609 462.225