Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01464 ATGGGCTGCGTTTTTGGGCGCGAGGTTTCTGCGAAGCCCGTTCAGAGACCGAACGCCGATGACGAAATTAGGGCTTCTGCCAAGGCGGAGGTTCCTGAGATTCGAGCTGATGCTGCCGCTAATGTCCGCAATGGCGGAAGTAGGAACGAGGTTGATGATGATAGAGGTTCGAGGCCGAGGCGGCGATCGTCGAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGTGAAGCTATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCCAGGGACTCTTTGACAGGGAAGATTGTGGCTCTGAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGCGTCAAGTTTATGGCCCGGGAAATTCTCATTCTGCGGCGTTTGGATCATCCAAATGTTGTTAAACTCGAAGGTTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATCTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAATCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACATTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATCGATAACGATGGGATCCTTAGGATAGCTGATTTCGGTTTGGCGTCTGTCTTTGATCCTAACCACAAGCATCCGATGACAAGTAGGGTGGTTACGCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTCGGTGTAGACCTCTGGAGCGCTGGCTGCATTTTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACTGAGGTAAAGCTCGTTAGCAATCCATGTTTCGTTCCGTCTTCAGTTCGTCGAATGCCGTTTGATCTTGTTGAGCAGCTGCATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACGTTTAAAGACTTCCCGCCGTCATCTCTGCCACTAATCGAGACGCTTCTCGCCATCGACCCCGCTGAACGCCTAACTGCCACCGCTGCTTTACATAGTGAATTTTTCACTACAAAGCCATATGCTTGTGAGCCTTCCAGTCTTCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTACGGGATGAAGAAGCTAGAAGGCTAAGAGCTGTTGGCAGAAGCAATGCAGATGGAGTGAAGGGAACACGGGCACGCGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGACGACGTCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGACGGAGCGATTGGCTACCAACTGGGATCTTCGCATCACGTCGATCCGATCTATGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCGTATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCCTTGATGGACCCAGGTGCTGTTGGTGCTCCTCCAAGAAGGAGAAAACACACCGCAGGTCATTCATCAAGATCATCATCCAAGGACTTGAATAAGGATAAAAGTTCTGCTCGTATCTAA 1761 49.46 MGCVFGREVSAKPVQRPNADDEIRASAKAEVPEIRADAAANVRNGGSRNEVDDDRGSRPRRRSSRPNPRLSNPPKHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTESQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILRIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVKLVSNPCFVPSSVRRMPFDLVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAVGRSNADGVKGTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGAIGYQLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPGAVGAPPRRRKHTAGHSSRSSSKDLNKDKSSARI 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10556839 10560626 - CmoCh06G014640.1 Cmo06g01464 385026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01464 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cmo06g01464 586 PANTHER CELL DIVISION PROTEIN KINASE 54 315 - -
Cmo06g01464 586 PANTHER CELL DIVISION PROTEIN KINASE 335 566 - -
Cmo06g01464 586 Gene3D Transferase(Phosphotransferase) domain 1 190 451 - -
Cmo06g01464 586 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cmo06g01464 586 SMART serkin_6 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01464 586 SUPERFAMILY Protein kinase-like (PK-like) 100 417 IPR011009 -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 569 586 - -
Cmo06g01464 586 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 543 586 - -
Cmo06g01464 586 CDD STKc_CDK9_like 107 412 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 14 31 - -
Cmo06g01464 586 ProSiteProfiles Protein kinase domain profile. 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01464 586 MobiDBLite consensus disorder prediction 492 513 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 47 61 - -
Cmo06g01464 586 MobiDBLite consensus disorder prediction 1 79 - -
Cmo06g01464 586 PANTHER OS01G0367700 PROTEIN 54 315 - -
Cmo06g01464 586 PANTHER OS01G0367700 PROTEIN 335 566 - -
Cmo06g01464 586 Pfam Protein kinase domain 107 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01464 Cmo14g01688 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01464 Cmo-Chr6:10556839 Cmo12g01117 Cmo-Chr12:10215589 0 dispersed
Cmo13g00857 Cmo-Chr13:7852988 Cmo06g01464 Cmo-Chr6:10556839 7.34E-67 dispersed
Cmo11g01308 Cmo-Chr11:8971984 Cmo06g01464 Cmo-Chr6:10556839 0 transposed
Cmo14g01688 Cmo-Chr14:13249022 Cmo06g01464 Cmo-Chr6:10556839 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74436 PF00069 Pkinase 3.50E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01464 K08819 - csv:101217952 981.089