Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01479 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCTGAAAGGCCTGAAGAGGCTGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGAACTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTGCACCGTCTGTTTATCCGCCCGTGCAGTCTCCATCTGCACATTCGTCACAGCAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGTTGTACAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTACCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTAATTCAAGATCAAGTGTTGTTCTTAGCCAAATAGAGCATGGTTTGACTGCTAAGTTGCGGACATTTGCAGTTAGCTATGCAGCTGCTATCCTTGCGAGTCAAAAGGCTAGATTGAGTTTATTATCATTATTCAAATACTACGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATATGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCTGGCCTGTCAGCGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGACGTACTTGA 1536 48.5 MKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRTGGRDYPERVGQPLCQYYMRTGMCKFGASCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPTYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVNSRSSVVLSQIEHGLTAKLRTFAVSYAAAILASQKARLSLLSLFKYYGAPPCTHFMQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSMSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSTTSVEGRT 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10642781 10646918 - CmoCh06G014790.1 Cmo06g01479 385041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01479 511 MobiDBLite consensus disorder prediction 455 511 - -
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 330 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 406 IPR000571 GO:0046872
Cmo06g01479 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Cmo06g01479 511 Gene3D - 292 346 - -
Cmo06g01479 511 Gene3D - 42 122 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 280 300 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 1 20 - -
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Cmo06g01479 511 Gene3D - 123 171 - -
Cmo06g01479 511 MobiDBLite consensus disorder prediction 441 511 - -
Cmo06g01479 511 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 379 406 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Cmo06g01479 511 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872
Cmo06g01479 511 PANTHER PROTEIN PHOSPHATASE RELATED 14 493 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Cmo06g01479 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 14 493 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Cmo06g01479 511 ProSiteProfiles Zinc finger C3H1-type profile. 379 407 IPR000571 GO:0046872
Cmo06g01479 511 MobiDBLite consensus disorder prediction 1 44 - -
Cmo06g01479 511 SUPERFAMILY CCCH zinc finger 378 410 IPR036855 GO:0046872
Cmo06g01479 511 MobiDBLite consensus disorder prediction 280 306 - -
Cmo06g01479 511 Gene3D - 376 427 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01479 Cmo14g01672 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01479 Cmo-Chr6:10642781 Cmo11g00965 Cmo-Chr11:5082995 1.14E-84 dispersed
Cmo14g01672 Cmo-Chr14:13175212 Cmo06g01479 Cmo-Chr6:10642781 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10031 PF00642 zf-CCCH 5.30E-09 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01479 - - mcha:111009281 772.696