Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00049 ATGATGGAGTGGCAGAACCAGCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGCCGCCGATGGAGTTGGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTCCTAAGGCAGCAGATCTCTGTCTATGCTTCCATCTGTGACCAACTTGTCGAGATGCATAAGGCAATCACCGCCCAGCAGGACCTTGCCGATGCTGCAAACGAGAACTGTAAGATTAACCGTGGCCTTGCTGTTCGTTTCATCATCAGAACCATCTGCTTGTGTTTCCTGTTTTTGATCCCTTTGATGCTCCAACATGACTGGAGAAATAGACTCTTTAGGAAAATAACTTTGCTCCTTGACAACTTCAATGTTTTCTGGTTTTCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCTTGTGCTGCTGGTCACAAGATAACTGCTAGGCAGCGGTGGACGCCCACACCTGTGCAGCTTCAAATTCTTGAGCGGATTTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGATACAATATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGGAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACCGAAGTCGATTCTCCAAAGGAGAAAAAGACAAAACCAGAAACCTTACAAGATTATGAACATTTTGTTCCGAAGTTGAGCAACGTGTATCCTCAGAGATCTGAATTAGGTGCTGAAATCCTTTCCTTTGACACACAAACGAATAAAGGGGAGCCCATGTTTCAATCTTTTGGATCTGGTCATATCAGTCAGATGACCCCAACACAGAATCATAGAAATAATATGTCAAATGAAAAAATGAACGTACCGGACTACTCTCCTTACTCTCCTTGTGAAGGATATCACTTGGTTGAGTGA 1002 43.81 MMEWQNQQQQQNQTEQLQMQMQVEQLSNAADGVGGLYVKVMTDEQMELLRQQISVYASICDQLVEMHKAITAQQDLADAANENCKINRGLAVRFIIRTICLCFLFLIPLMLQHDWRNRLFRKITLLLDNFNVFWFSGMRLGNLYCDPIMACAAGHKITARQRWTPTPVQLQILERIFDEGNGTPSKQKIKDITLQLIQYGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETLQDYEHFVPKLSNVYPQRSELGAEILSFDTQTNKGEPMFQSFGSGHISQMTPTQNHRNNMSNEKMNVPDYSPYSPCEGYHLVE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 208487 210344 - CmoCh09G000490.1 Cmo09g00049 388051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00049 333 MobiDBLite consensus disorder prediction 218 252 - -
Cmo09g00049 333 CDD homeodomain 160 222 IPR001356 GO:0003677
Cmo09g00049 333 PANTHER - 136 318 - -
Cmo09g00049 333 PANTHER - 2 79 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 235 252 - -
Cmo09g00049 333 SMART HOX_1 158 225 IPR001356 GO:0003677
Cmo09g00049 333 PANTHER WUSCHEL-RELATED HOMEOBOX 13 136 318 IPR044559 GO:0003700
Cmo09g00049 333 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 79 IPR044559 GO:0003700
Cmo09g00049 333 SUPERFAMILY Homeodomain-like 159 222 IPR009057 -
Cmo09g00049 333 Gene3D - 162 226 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 302 333 - -
Cmo09g00049 333 MobiDBLite consensus disorder prediction 302 318 - -
Cmo09g00049 333 Pfam Homeodomain 160 220 IPR001356 GO:0003677
Cmo09g00049 333 ProSiteProfiles 'Homeobox' domain profile. 156 221 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02079 Cmo09g00049 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00143 Cmo-Chr6:768695 Cmo09g00049 Cmo-Chr9:208487 7.30E-67 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo16g01322 Cmo-Chr16:9380247 3.03E-63 dispersed
Cmo09g00049 Cmo-Chr9:208487 Cmo01g02079 Cmo-Chr1:14469978 4.85E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10314 PF00046 Homeodomain 7.70E-18 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00049 - - bhj:120085747 371.318