Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00310 ATGACTATGGAAGTTACTTCTGAATCTCAGCAGCATTCTGTCTACCACCACCAAAGCCAGCCAACTCCAGCAATAGCTATCTCCAACACCATGTCAAATAGCTTCTCAGCTTCCCAGCACTACAATGGTGATTTTCTGTCTCCCCTGTCTGTAATGCCGCTCAAGTCAGATGGGTCTCTTTGTATCATGGACTCAATCAGCAGATCACAAACTCCAGAAACATTGCCAAACATCTCCCCAAAACTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCGGCCACAGCTCTAAGCTTAGACAGCAGATATTACAATCAAAATCCTGAGGCTAACTCAGAAAGACAACAACGTATTCTTCTTCATTCTGAGCGATACTATTCTGGAATGTTCCATTATCCTGCTGAGGATGTCAACAAGGAGTCTCATATTGCAAGTTATTGCTCTGAAATTCGACAAGATATGGAGCAGCGCATCAATGGCTGCTTTGGAGGAGGGAGGAATTGCCAAGACTTGCAGACACTTAGCTTGTCCATGAGCCCTGGCTCTCAGTCTAGTTGTGTTACTACACCAAGCCAAATTTCTCAATCTGGACAAGCCACCATGGAGACAAAGAAAAGGGCTTTGGCTGATCGAAAGCAGCCGGTCCATCGGAAGTCGATCGACACGTTCGGACAAAGAACTTCACAGTATAGAGGTGTTACAAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACCAGGAAAGGGAGACAAGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTCCGTGGCATAAACGCCGTGACAAACTTCGACACTTCAAGGTACGACGTAGAAAGGATCATGGCGAGCAGTAGCCTCCTCTCAGGAGAATTTGCAAGACGAAATAGAGATCACAAACCAACCAACGCCATCAAACATGAAGAACCAAAGCAGAACATCTCTCGAACCGACCCCGCGGAGATATACAACAACAATTTAGATTGGAGGACTGTATTCCACGAGAACCTGCTGCTGGATCCAAGCGCAAGCGTCGAATCCATAGACCAAAAGTCCATGGCCTCGAGCGGCGGATACCTGAATAATCTGATCGGAGTCGTCGTAGGTTCAAGCAAGTACAAGGCTCAATTCTCCAATGCTTCATCTGTGGTGAGCAGCTTGAGCAGCTCAAGGGAAACTAGTCCTGACAAGCCAAATGGCTCCTCCTCGGTTCCATTTGGAAGCAATGGAAGAAGTATTTGGAAGCAAATGAGGCCAGCTCCTATTTCTTTGCCTGTTGAGTCAACTGTTGCAAATTTTCTTAAAAGAAAGAGACAACTGGTTTGCATAATAAGGTGTATGTATAGAGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGTTGCTTTCTGTAAAGAAAAGGAAAAGAGAAACTTTCTTCAAAAGTGTGATGGAATGAAGCATCAAGCATGGGCGGAGATTAGCTTTGAAAAAGGAATAGATTTGGGTGGTGTTGACCAGAGGTTTGACTGGGGGTGGGTGGGTGGCTGGCGATTGGCTGTGACTAGAAAGAAGATGCAGACAGACGGGAAGAGTATAGCTGGAAATGGAAGAGCAGGACAAGCAATAAGGTTGGTTCGTGAAATGGGTGATCTTGAAAACGACGAAATGGGTTTTCGAAATTCAAACGAGGGGTTACTCAATTGTTCATCTTCCGACAAAATTCCAGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCAATGGTTTCTTCCCATGGCGAATTTTCAAATTCTTTTCCTGTTGTCTTGGAGAGCCATGGTGGGAGTGGGACGACACAGGGTGTTCATTATCCGACAGATTTGGGGTTTGGCAATGGGAATTATTCCGACATGTTTGGTTCTTTTGGTGTTGCCGGGCAGATTCTTGGTGGGTGTTCTTCCAATTACAGAAATGGAGGAACCACAGAGAAGTTATTACCACTATCAGGTGAAGAAACTGCTGCAGGATCACCAAATGGTAAACTCAGAAAACGAGCCCTTGACTCCACTTTCCCATTTAGCCAACCAAACAAGGTGAGGAGGGAGAAGATTAGTGAGCGGATGAGATTGCTTCAAGAGCTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTTATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGATTTTCCACACACGAGGCAGCAACGGAACTGTTCTTGGATATGATCCCGGGTTGAGCGCGGTTTCCCCGGTCCCTCCTCACCGAATATTTCAGCTTCAGGGGACGATGTCAAATATGCCAACCACCACCACATTCACACAGTTTCCTCCTTTGCCTCAGGTAGCTAACATGACCGTGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGAGTTCGGGCACTCACAATTTGGAACCAAATGGTATTCATTCTTGTTCATGA 2538 45.74 MTMEVTSESQQHSVYHHQSQPTPAIAISNTMSNSFSASQHYNGDFLSPLSVMPLKSDGSLCIMDSISRSQTPETLPNISPKLEDFLGGATHGREAATALSLDSRYYNQNPEANSERQQRILLHSERYYSGMFHYPAEDVNKESHIASYCSEIRQDMEQRINGCFGGGRNCQDLQTLSLSMSPGSQSSCVTTPSQISQSGQATMETKKRALADRKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGTQEEAAEAYDIAAIKFRGINAVTNFDTSRYDVERIMASSSLLSGEFARRNRDHKPTNAIKHEEPKQNISRTDPAEIYNNNLDWRTVFHENLLLDPSASVESIDQKSMASSGGYLNNLIGVVVGSSKYKAQFSNASSVVSSLSSSRETSPDKPNGSSSVPFGSNGRSIWKQMRPAPISLPVESTVANFLKRKRQLVCIIRCMYRVCVRERERERERDGVAFCKEKEKRNFLQKCDGMKHQAWAEISFEKGIDLGGVDQRFDWGWVGGWRLAVTRKKMQTDGKSIAGNGRAGQAIRLVREMGDLENDEMGFRNSNEGLLNCSSSDKIPGTMAMGSFFGSGWDPMVSSHGEFSNSFPVVLESHGGSGTTQGVHYPTDLGFGNGNYSDMFGSFGVAGQILGGCSSNYRNGGTTEKLLPLSGEETAAGSPNGKLRKRALDSTFPFSQPNKVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEIFHTRGSNGTVLGYDPGLSAVSPVPPHRIFQLQGTMSNMPTTTTFTQFPPLPQVANMTVLESDIQSLLQMGFDSSSGTHNLEPNGIHSCS 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1336180 1346218 + CmoCh09G003100.1 Cmo09g00310 388312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00310 845 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 710 757 IPR036638 GO:0046983
Cmo09g00310 845 Gene3D AP2/ERF domain 230 293 IPR036955 GO:0003700|GO:0006355
Cmo09g00310 845 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PRINTS Ethylene responsive element binding protein signature 232 243 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 168 264 - -
Cmo09g00310 845 SUPERFAMILY DNA-binding domain 230 292 IPR016177 GO:0003677
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 168 264 - -
Cmo09g00310 845 SMART rav1_2 231 297 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 266 424 - -
Cmo09g00310 845 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 700 750 IPR011598 GO:0046983
Cmo09g00310 845 SMART finulus 706 756 IPR011598 GO:0046983
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 266 424 - -
Cmo09g00310 845 ProSiteProfiles AP2/ERF domain profile. 231 291 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 131 - -
Cmo09g00310 845 CDD AP2 230 293 IPR001471 GO:0003700|GO:0006355
Cmo09g00310 845 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 19 131 - -
Cmo09g00310 845 MobiDBLite consensus disorder prediction 405 427 - -
Cmo09g00310 845 Gene3D - 706 763 IPR036638 GO:0046983
Cmo09g00310 845 Pfam AP2 domain 231 283 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00125 Cmo09g00310 CCT
Cmo09g00310 Cmo12g00550 CCT
Cmo01g01825 Cmo09g00310 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01825 Cmo-Chr1:13364902 Cmo09g00310 Cmo-Chr9:1336180 1.93E-49 dispersed
Cmo09g00310 Cmo-Chr9:1336180 Cmo20g00077 Cmo-Chr20:403519 7.91E-19 dispersed
Cmo01g01823 Cmo-Chr1:13357555 Cmo09g00310 Cmo-Chr9:1336180 2.54E-48 wgd
Cmo12g00550 Cmo-Chr12:3388854 Cmo09g00310 Cmo-Chr9:1336180 7.39E-65 wgd
Cmo03g00934 Cmo-Chr3:7088777 Cmo09g00310 Cmo-Chr9:1336180 1.60E-29 wgd
Cmo05g00125 Cmo-Chr5:542544 Cmo09g00310 Cmo-Chr9:1336180 7.29E-31 wgd
Cmo07g00637 Cmo-Chr7:2876799 Cmo09g00310 Cmo-Chr9:1336180 1.79E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10339 PF00847 AP2 4.00E-08 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00310 K09285 - csv:101212143 429.483