Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00208 ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCCCTTCGCCTTCCTCATTTCGCATCCACCGCTTCTCTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCAACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACGTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCGAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGGTTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCGGACTTGAATGCATTGGAATTTGGCGAAAGGATTCATAGTCATATTCAACAGCACGGTTATAATACCGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGCGGTGTGGACGTGTGGATAAGGCGTATGAAGTGTTTGATAAAATGCCTGAGAAAAATGTTGTTTCGTGGAGTGCGATGATTTCCGGGTTATCGATGAATGGACACGGGAGAGAAGCTATTGAAGCGTTTTGGGCGATGCAAAAGAAGGGTGTTGAGCCTGATGATCATACTTTCACTGCAGTTCTTTCTGCTTGTAGCCATTGTGGGCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCATAATTGAGCATTTGATTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGCTGCTGAACATTTATTCTTCGGCTGGGAACTGGGTCAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCGATGAAGGACAAGATCTACGAGCAGCTGGACGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTAAAGGCAGAAGATAAGGGGTATGCGCTTTCTTTCCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACCCCGCCAGGAAGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCATGGATTGTCATAACTTTGCTAAATATGTCTCAAGTGTTTATAACCGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 1887 44.99 MTVIFRRCRCSADRHLHSLRLPHFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCKPDKVTCLLLLQACADLNALEFGERIHSHIQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWAMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIVPTVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATMWRTLLGACRIHGHANLGERIIEHLIELKSQEAGDYVLLLNIYSSAGNWVKVTELRKFMKERGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYEQLDEINKQLKIAGYEAEISSELHNLKAEDKGYALSFHSEKLAIAFGVLATPPGRTIRVANNLRTCMDCHNFAKYVSSVYNRKVVVRDRSRFHHFREGRCSCNDYW 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 931570 933456 + CmoCh10G002080.1 Cmo10g00208 389554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00208 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Cmo10g00208 628 Pfam E motif 440 500 IPR046848 -
Cmo10g00208 628 Gene3D Tetratricopeptide repeat domain 273 365 IPR011990 GO:0005515
Cmo10g00208 628 Gene3D Tetratricopeptide repeat domain 366 513 IPR011990 GO:0005515
Cmo10g00208 628 Gene3D Tetratricopeptide repeat domain 164 272 IPR011990 GO:0005515
Cmo10g00208 628 Pfam PPR repeat 295 317 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 192 220 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 358 386 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 220 247 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 121 152 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Cmo10g00208 628 TIGRFAM PPR: pentatricopeptide repeat domain 293 322 IPR002885 -
Cmo10g00208 628 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 49 620 - -
Cmo10g00208 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Cmo10g00208 628 PANTHER OS08G0434000 PROTEIN 49 620 - -
Cmo10g00208 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cmo10g00208 628 Pfam PPR repeat family 320 368 IPR002885 -
Cmo10g00208 628 Pfam PPR repeat family 217 267 IPR002885 -
Cmo10g00208 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Cmo10g00208 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Cmo10g00208 628 Pfam PPR repeat 120 149 IPR002885 -
Cmo10g00208 628 Pfam PPR repeat 395 420 IPR002885 -
Cmo10g00208 628 Gene3D Tetratricopeptide repeat domain 40 163 IPR011990 GO:0005515
Cmo10g00208 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00208 Cmo11g00166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00208 Cmo-Chr10:931570 Cmo07g00074 Cmo-Chr7:470182 9.12E-161 dispersed
Cmo10g00208 Cmo-Chr10:931570 Cmo10g00608 Cmo-Chr10:2749382 1.11E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00208 - - mcha:111007242 1106.66