Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g00172 | ATGGCCACCGTCACCACTCAAGCTTCCGCCGCCGTTTTCCGGCCATTCGCCTCCCGATCGAGGTTCCTTACTGGGTCTTTCGGTAAACTCCACCGCGAGCTGTCGGTTAAACCGGTGGCTGCTTCGCCGTCTTCATCGTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTGCCGGCGACAACGGATTCGACCCACTGGGTCTAGCGGAGGACCCAGAGAATTTGAGGTGGTTCGTGCAAGCGGAGCTCGTGAACGGGCGGTGGGCGATGCTGGGTGTGGCCGGAATGCTTCTGCCGGAGGTTTTCACGAAGATCGGAATCATCAACGCGCCTCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCGTCTTCCACTCTGTTCGTGATCGAGTTCATCCTGTTCCATTACGTCGAAATCCGGAGATGGCAGGACATTAAAAACCCAGGAAGCGTGAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAAGTGGGGTACCCTGGTGGCATTTTCAACCCCCTGAACTTCGCTCCCACTCTTGAAGCCAAAGAGAAGGAAATCGCCAATGGTAAGATCTTCAAAAAGAAAACCCAGATTTTATATGTTGATCTTAGAGGCTGTGGCTTACGATGCTGTGAATTGGGGAGGCTCGCAATGTTGGCGTTTTTGGGGTTCATCGTGCAACATAATGTGACCGGAAAGGGGCCATTTGAGAACCTTTTGCAGCACATTTCTGACCCATGGCACAACACCATTGTCCAGACATTCGGTGGCAACTAA | 834 | 52.76 | MATVTTQASAAVFRPFASRSRFLTGSFGKLHRELSVKPVAASPSSSFKVEAKKGEWLPGLPSPAYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGKIFKKKTQILYVDLRGCGLRCCELGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 834931 | 836675 | - | CmoCh11G001720.1 | Cmo11g00172 | 390791 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g00172 | 277 | SUPERFAMILY | Chlorophyll a-b binding protein | 233 | 274 | - | - | |
| Cmo11g00172 | 277 | Gene3D | Chlorophyll a/b binding protein domain | 63 | 267 | - | - | |
| Cmo11g00172 | 277 | Pfam | Chlorophyll A-B binding protein | 63 | 208 | IPR022796 | - | |
| Cmo11g00172 | 277 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 210 | IPR001344 | GO:0009765|GO:0016020 | |
| Cmo11g00172 | 277 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 1 | 210 | - | - | |
| Cmo11g00172 | 277 | SUPERFAMILY | Chlorophyll a-b binding protein | 53 | 209 | - | - | |
| Cmo11g00172 | 277 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 233 | 277 | - | - | |
| Cmo11g00172 | 277 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 233 | 277 | IPR001344 | GO:0009765|GO:0016020 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00213 | Cmo11g00172 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g00172 | Cmo-Chr11:834931 | Cmo11g00756 | Cmo-Chr11:3676214 | 3.32E-55 | dispersed | |
| Cmo01g00834 | Cmo-Chr1:4452811 | Cmo11g00172 | Cmo-Chr11:834931 | 1.75E-154 | wgd | |
| Cmo10g00213 | Cmo-Chr10:948889 | Cmo11g00172 | Cmo-Chr11:834931 | 2.80E-173 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g00172 | K08910 | - | csv:101222701 | 463.766 |