Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00273 ATGGTTGTTCTTGCTGAGTCCCGTTGTCGTCATCATCATCGTCGTTCATCAAAATCTCAAAGAGATGAGATATGTGTATTCTTCTTCGTTATTCATCCATCCATCGAGCCATGCGTATTAGCTGTAATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAAAGCTGCTCCATCAGGCCTTGTCTTCAATGGATCAAAACCCCCCAATCCCAAGCCAACGCCACCTTCTTCCTTGCCAAATTCTACGGCCGAGCTGGCCTCGTTAATCTCATCAATGCCGGCCCCGATCATCTCCGCCCTGGTATTTCATCATATTCTACTCTGTTTCAATTACTCTGTTTTCATTGCTCTGTTTCAGTTACCTAAGGCTGTTTTTTGTTTTTTGGGTGTTTCAGCGATTTTTAAATCTTTGCTATTCGAGGCGTGTGGGCGGATTGTGAACCCGATTTATGGGTCGGCCGGACTGTTGTGGTCCGGGAGCTGGCAGCTGTGTCAGGACGCCGTCGAAGCCGTTCTCAAAGGTGCACCGATTCTGTCTGTTTCTTCTGAGACTGCGGTGTCGCACATGGGCCCACCGTTGAAGGGCTGCGACATCCGCCACGTTTCGAAACAGCAAGGCGCCGCCCCCGATTCCGCGCTCCGGAAGATCAAAACACGACGGCGGTTCAAGCGATCGGCGCCCAACAAGCCGATGCCGAAGGAGGAGCCGGTGGTGGTAAATGAGTTCGTATTCGACGATCCGACTCGAGTTGTATCGGAGCCCCGGTGTTTGAAGTTCGAGCTGGATAGTTGGGTGGGCCATAAATCGCAGGAGAAGGACTGCAGCAGCAGCAGCGACGAGGCCGAGTGTTTGTCGGTGGAGGGTTCTGCAGTTGGGCAGGGTGGTGACGTGGAGTTAGAACTTAGCTTGGGGTTATAG 918 52.4 MVVLAESRCRHHHRRSSKSQRDEICVFFFVIHPSIEPCVLAVMDAEFFAKAAVKAAPSGLVFNGSKPPNPKPTPPSSLPNSTAELASLISSMPAPIISALVFHHILLCFNYSVFIALFQLPKAVFCFLGVSAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQDAVEAVLKGAPILSVSSETAVSHMGPPLKGCDIRHVSKQQGAAPDSALRKIKTRRRFKRSAPNKPMPKEEPVVVNEFVFDDPTRVVSEPRCLKFELDSWVGHKSQEKDCSSSSDEAECLSVEGSAVGQGGDVELELSLGL 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1337398 1339846 - CmoCh11G002730.1 Cmo11g00273 390892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00273 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 132 276 - -
Cmo11g00273 305 Pfam Lateral organ boundaries (LOB) domain 132 170 IPR004883 -
Cmo11g00273 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 132 276 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00250 Cmo11g00273 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00273 Cmo-Chr11:1337398 Cmo14g00825 Cmo-Chr14:4272280 2.04E-39 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo11g00273 Cmo-Chr11:1337398 1.21E-77 wgd
Cmo11g00273 Cmo-Chr11:1337398 Cmo18g01029 Cmo-Chr18:11077585 2.60E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10536 PF03195 LOB 1.60E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00273 - - csv:101219232 267.7