Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00198 ATGGAAGCTCCCGAATATTTCCACAACAATGCTTACTGCTCCCAATTCACCTCCGACAAAGACGCCGCCGCCGCCACCACCGCCGACCACTTCATCGTCGAAGAGCTTCTCGATTTCTCCAACGACGACGACTCCGCCATTGCCGACTCCGGCGGCTTCTTCAATAACGTCACCTGCTTCTTGAATGGAAACTCCGCTGAATCCTCCGCCGCCACGGCGGTGGAGAGTTCCAATTCCTCCTCCTTTTCAGGTTCTGAACGGACTTCGTTTTTCGACGATGTTTCTGCCTCTTCTTTAGCCGATGTCCGTTTCTCCGACGACATCTTCATTCCGTACAATGAGTTGGTTGAGTTGGAATGGCTTGCAAGTTTTGAAGAGGAACCGTTTTCCAGCGAGGATATGCAAAAGCTAGAACTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCACCCCAATCCCACCACCCAACCAACGCGGTCTCCGCCCTCTCTCACGGCCGAAATGCAGCAGCTGCGATCTTCAAACCCGACATTGTAGCGGTTCCGGCGAAGGCCCGGAGCAAACGCTCACGCACCATCCCATCAAATTGGAACAACTCCCGTCTCCTCCCACTTTCTCCGACCAGCTCCTCCTCCGAGCTAGACATCCCGGCCACCGAACCGCCACCGCACCCGGTTAAGAAAGTCCCTCCCAAAGTGGCGGCGACGGCGACGGCGGCGGTGAAGAAAAAAGAATCCTCCTCCTCATCGGAGACCGGAATGTCGGCTGGAGAAGGGCGGAAGTGTATGCACTGTGCCACTGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTTTGTAACGCTTGTGGGGTCCGCTACAAATCCGGGCGGCTAGTGCCGGAGTATCGGCCGGCGGCGAGCCCGACATTTGTGCTGACGAAACACTCGAATTCCCACCGGAAAGTGTTGGAGCTCCGACGGCAAAAGGAACTGCAGAAAGCGCAGGAACAGCAGGCGTTGATGATGGATCATCATCACCATCATCACCATCAGGAAATGATGTTTGATTCATCCAACGGTGAGGATTATCTGATGAAGCAAAACGTGGCTCATGATTACCTGCACCTGATCTGA 1128 55.5 MEAPEYFHNNAYCSQFTSDKDAAAATTADHFIVEELLDFSNDDDSAIADSGGFFNNVTCFLNGNSAESSAATAVESSNSSSFSGSERTSFFDDVSASSLADVRFSDDIFIPYNELVELEWLASFEEEPFSSEDMQKLELITGVKVKPDEPPQSHHPTNAVSALSHGRNAAAAIFKPDIVAVPAKARSKRSRTIPSNWNNSRLLPLSPTSSSSELDIPATEPPPHPVKKVPPKVAATATAAVKKKESSSSSETGMSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQKAQEQQALMMDHHHHHHHQEMMFDSSNGEDYLMKQNVAHDYLHLI 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1292596 1296626 - CmoCh12G001980.1 Cmo12g00198 392886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00198 375 CDD ZnF_GATA 261 308 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 SMART GATA_3 256 306 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 PIRSF Txn_fac_GATA_plant 13 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo12g00198 375 Pfam GATA zinc finger 262 295 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 MobiDBLite consensus disorder prediction 189 216 - -
Cmo12g00198 375 PANTHER GATA TRANSCRIPTION FACTOR 1 375 - -
Cmo12g00198 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Cmo12g00198 375 Gene3D - 254 336 IPR013088 GO:0006355|GO:0008270
Cmo12g00198 375 MobiDBLite consensus disorder prediction 185 258 - -
Cmo12g00198 375 PANTHER GATA TRANSCRIPTION FACTOR 1 375 - -
Cmo12g00198 375 MobiDBLite consensus disorder prediction 241 255 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00615 Cmo12g00198 CCT
Cmo09g00615 Cmo12g00198 ECH
Cmo05g00609 Cmo12g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00198 Cmo-Chr12:1292596 Cmo14g01329 Cmo-Chr14:11109848 2.28E-78 dispersed
Cmo12g00198 Cmo-Chr12:1292596 Cmo05g00609 Cmo-Chr5:3045969 1.17E-119 wgd
Cmo12g00198 Cmo-Chr12:1292596 Cmo09g00615 Cmo-Chr9:3073403 1.67E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10700 PF00320 GATA 2.00E-15 CL0167 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00198 - - cpep:111799217 598.971