Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00455 ATGCCTTTCTTTCACAAAAGCGCTTCGAATTCTCGGCTTCAACAGAAAGCACCAGATTCTGTTTTCTCCGTTGGTCCACCGGAGCCGCTCGCTCAGCGTCGGCTTACCAGGCAGAGGAAGCTCCGGCATCTTACGGATCGAGATATTCGCTTTGAACAACCTCGATCGTTTCCTGATTCTCCCGATTTATTGTCAAAATCTAAAACAGGTCTTGGAGGTTCCGAACGTTGGTCCTCCATTGCTTTGCCGCAGCCTTTACCTCTGCCAGAGTTCTTTCCGATTCGAAATCCAGAGTCAGGTTCTTGGAGTTCTGGACAAGGTCGCGGTGGATCGCCTTTTGAAACTCCGGTCGGGAAGAGCGCCGATCACGCAACAGCGAAGAGTAGAAGTTCCGGTAACAATCAAAGGCGAATCGCTACAGATTTAGCCTTGGAAGTTGCTAACGGACATACAGGAGGAACCCAACCTGTAAATTTAGGGAAATCGAATTTGATTAAGGATTTTGTTTTTAGTTGTTTGGATCAACATCCAAACAACAAAGCCAGGGGTTCCCCAACTCATCCGAGTGTTGAAAAGGGTAACCACAAAGTGAAACAGAAGATTTCGACGTCGAAGAGTGCACCGACGAGCATCTTTCCGAGTCCTGCCGTTAGCCCGCGAAGATCATGTACAGGAGATCCTTTTGTTTCTGGTTTGACTCGCCATGAACATCAGGAATCTCCTTCCAATAATTCTCCCAAAGTACCATCCCTTAAAACTCCAAATAGTTCTCAACCTTCTCCTCTGCAAAGCCCGGCAGCTCGAAGTTCCGTAAGCAATCCCAGATCTTCTAATGATACGCCATTTCCTCTGCATCATAAGTTACAAAAGAATCATAGTATAGGTCATGTCAATGCCCATCCATTGCCTCTTCCTCCTCCATTAGTAGCCTCGTCACAATCGTCTCCCCAATCTCTTCCATCGAAAGAGAAACCATACATTTCATCTGTGAAAGGTCAATGGCAAAAGGGAAAGCTTATTGGACGTGGTACGTTTGGAAGCGTTTATCTCGCAACAAACAGCGTCTATGAAGTCATCCTCATAGTTACTTGCATACATTTTAGCGAGACTGGAGCTTTATGTGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAAATTAAAGTTCTTAGTCAACTTAAACATCCAAATATTGTACAGTATTATGGAAGTGAAATAATTGGGGATCATTTCTACATATATTTGGAGTATGTTTTTCCTGGGTCAATAAATAAATTTGTCCGCGAACGTTGTGGAACCATTACAGAATCTATCGTTCGCAACTTCACCCGACATATTCTCTCTGGACTCGCTTACTTGCATAGCACAAAAACGATCCACAGGGATATCAAAGGTGCAAACTTGCTAGTTGATTCATCGGGCGTCGTCAAACTTGCAGATTTCGGGATGGCGAAACATCTGACAGGGCAGTACGATCTTTCGTTGAAGGGTAGTCCGTATTGGATGGCTCCGGAGGTCATAAAGGCTGTTATGTTGAAAGATGCCAACCCTGATCATGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCACCATAATTGAAATGCTGAATGGAAAACCTCCATGGAGTGAGTTTGAAGGGGTGAGTTTCTTAGTTAACAAAATGGAGTCAGCACCTAAATTCGGTCGTTACCGAAACATCATTGAACTAACGATAAATTACCATCAAGTTATGTTCAAGGTGTTGAATAAAGCCCCTCCTATTCCAGAAAAGCTATCTCCAGAAGGGAAAGATTTCCTCCAGTGTTGCTTCCAAAGGAATCCAGCTGACAGATCAACAGCAACGATGCTCCTTGACCATCCTTTCGTAAGATCCTCAATCGACTCAACCGTTTCAGTCCCGACATCAGCATTTTCAACGATGAACCTCGTGGTATTGAATCCTCAAGATCCTGTTCCTCCCAAAGGAGATCAGCTTTCCTTGCAACTAACCTCCGTTCTTAATCGACTCGCAGCCCTTCATCGAACATTCCGAGCAATATTCCTGCCAGTGCCGTTAATAACCATCACTTTTCTATCTCAAGGACTCATAAAAGGGAAGTACCACACCTCTGAACTACAGTTGTGGATATATTTACAGGCAAATCCTAGACCCGAGGAGGCTGGCGACATGAGCTGGGATAGAGCATCTTTTTCGCCGTTGGAGAGTGACTCTGTTTTCTTCACCTCTCTAATGTCACTCCCAATTGACCAACAATCTCCGCCGGCGCCCGGAATGCAGCAACCTTACGGCGGCTCTGTTGGTCCTGTCATTGGAGTGCTCGTCGTCATCATTGTGTTCGCGGTGGTCGCTGTCGTTGTGGGGCGGCTGTGCTCGGGGAGGAGTATAATGGGTTACGGCCATTTTGACTTGGAGAGATGGGCGGAGGTCAAATGCTCGTCTTGTATTGACGGAAGGATTAGGCCGCCGTCGCCGAGGGTTAATGTCTCCACCGGCGCTGGTTCTCTTCCGGCGGCGACAATGTCGGTCCAAACCCAGCAAGATGAACCAGCTTCTCAAAATCCACCTCCCAACGCTTGA 2616 46.22 MPFFHKSASNSRLQQKAPDSVFSVGPPEPLAQRRLTRQRKLRHLTDRDIRFEQPRSFPDSPDLLSKSKTGLGGSERWSSIALPQPLPLPEFFPIRNPESGSWSSGQGRGGSPFETPVGKSADHATAKSRSSGNNQRRIATDLALEVANGHTGGTQPVNLGKSNLIKDFVFSCLDQHPNNKARGSPTHPSVEKGNHKVKQKISTSKSAPTSIFPSPAVSPRRSCTGDPFVSGLTRHEHQESPSNNSPKVPSLKTPNSSQPSPLQSPAARSSVSNPRSSNDTPFPLHHKLQKNHSIGHVNAHPLPLPPPLVASSQSSPQSLPSKEKPYISSVKGQWQKGKLIGRGTFGSVYLATNSVYEVILIVTCIHFSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIGDHFYIYLEYVFPGSINKFVRERCGTITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVIKAVMLKDANPDHALAVDIWSLGCTIIEMLNGKPPWSEFEGVSFLVNKMESAPKFGRYRNIIELTINYHQVMFKVLNKAPPIPEKLSPEGKDFLQCCFQRNPADRSTATMLLDHPFVRSSIDSTVSVPTSAFSTMNLVVLNPQDPVPPKGDQLSLQLTSVLNRLAALHRTFRAIFLPVPLITITFLSQGLIKGKYHTSELQLWIYLQANPRPEEAGDMSWDRASFSPLESDSVFFTSLMSLPIDQQSPPAPGMQQPYGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLERWAEVKCSSCIDGRIRPPSPRVNVSTGAGSLPAATMSVQTQQDEPASQNPPPNA 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2785245 2791746 + CmoCh12G004550.1 Cmo12g00455 393143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00455 871 MobiDBLite consensus disorder prediction 176 326 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 235 284 - -
Cmo12g00455 871 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cmo12g00455 871 SMART serkin_6 334 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 Pfam Protein kinase domain 335 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 PANTHER - 584 683 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 1 136 - -
Cmo12g00455 871 SUPERFAMILY Protein kinase-like (PK-like) 329 654 IPR011009 -
Cmo12g00455 871 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 584 683 - -
Cmo12g00455 871 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 571 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 200 217 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 840 865 - -
Cmo12g00455 871 ProSiteProfiles Protein kinase domain profile. 334 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00455 871 MobiDBLite consensus disorder prediction 41 55 - -
Cmo12g00455 871 PANTHER - 1 571 - -
Cmo12g00455 871 MobiDBLite consensus disorder prediction 835 871 - -
Cmo12g00455 871 Gene3D Phosphorylase Kinase; domain 1 313 429 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00205 Cmo12g00455 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01345 Cmo-Chr11:9320893 Cmo12g00455 Cmo-Chr12:2785245 1.02E-12 dispersed
Cmo12g00455 Cmo-Chr12:2785245 Cmo16g00126 Cmo-Chr16:566206 1.48E-97 dispersed
Cmo19g00640 Cmo-Chr19:6934230 Cmo12g00455 Cmo-Chr12:2785245 3.22E-15 dispersed
Cmo12g00455 Cmo-Chr12:2785245 Cmo05g00205 Cmo-Chr5:895707 0 wgd
Cmo12g00455 Cmo-Chr12:2785245 Cmo07g00734 Cmo-Chr7:3325183 1.63E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74720 PF00069 Pkinase 3.40E-60 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00455 - - cmo:103487921 937.562